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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_88541g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 46995.2 Da PI: 7.5002 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.8 | 2.1e-09 | 195 | 215 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ GtC++Gd C FaHg MA_88541g0010 195 ACPDFRK-GTCRRGDACEFAHG 215 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.97E-5 | 189 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 190 | 216 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 191 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 195 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 195 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 225 | 248 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.484 | 225 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MGPLPWSFFS DHSSDNHGND SVHFMSPGRS GGLNLNEPQF SSSPNSDYMN SSPSSRFAGG 60 RGFEEDRGAL SIPDFSDMSF GYDAGQSNGD FLPYKDGRGE MGVRINNAFV GSAAPSPWLD 120 DVICALQKYL PSNNEDEESL PAVDAYSCDE FRMYEFKVRR CMRGRSHDWT ECPFAHPGEK 180 ARRRDPRRFH YSGTACPDFR KGTCRRGDAC EFAHGVFECW LHPARYRTQP CKDGRSCKRR 240 VCFFAHTPQQ LRLLPGLSSP SSNSRSSASL HVASALKNFS LSASAAAYDG SPLRHALEGV 300 VSSSPPGGSL MSSPTSTLVG HSQSPPSLSP PLSPSASPPL SPEPGWSNTY RVGLQKAVLN 360 RQLPGHRRHV DRISSMPSES SRGLSSPRLM TLSDTNSQQP MVELMNSLQG LSGFSSELWE 420 QCCMAETAMG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115849 | 0.0 | BT115849.1 Picea glauca clone GQ03707_G19 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378892.1 | 2e-92 | zinc finger CCCH domain-containing protein 35-like isoform X2 | ||||
TrEMBL | B8LMK4 | 5e-97 | B8LMK4_PICSI; Uncharacterized protein | ||||
STRING | PP1S177_93V6.1 | 2e-91 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 2e-73 | C3H family protein |