PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_88101g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRF
Protein Properties Length: 729aa    MW: 77647.1 Da    PI: 8.0862
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_88101g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.9e-25240284145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  MA_88101g0010 240 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKPVEG 284
                    79****************************************985 PP
2QLQ62.51.1e-21169204136
            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                    s+FT++Q+q+L++Q+l++Ky++a++PvPp+Ll + +
  MA_88101g0010 169 SPFTPSQWQELEQQALIFKYMMAGVPVPPDLLIPFR 204
                    89******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-13169205IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.416170205IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-15170202IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.33240284IPR014977WRC domain
PfamPF088794.7E-21241283IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDFSAACLDG MLGGGLNSSS NNGNGNGHRL CRSASEMDLE QTSRDQDWRS SSSASIKMAR  60
TDSFPTLMRS SSVISDASAV RMETNNNSSA ASDLLESAEA AMLMRSDSVV SPYRSCLPFY  120
HHHQQQQQQA GGYQYANNSN KPSGLPLSMG RAETMNSAGM HAILAGTRSP FTPSQWQELE  180
QQALIFKYMM AGVPVPPDLL IPFRRNINIF SSLPVAGSTL RSNLGWSSSF HLGFAASNAD  240
PEPGRCRRTD GKKWRCSRDA VPDQKYCERH MNRGRHRSRK PVEGQTPHHH HSATAQSSST  300
SGAANNSSSA SSLAAAAAPA NNSSSASSLA AAAARSAVTA TNTTTTTTSA TASSTSSQTN  360
LLRSSISTHQ QQQIGTKLSV FPATMSAGGG VASPAASVSP FQIPLNVDRY LNGMKGDIDG  420
PMFESSSHSI NGMSMLSSVN NTWGSRNMVP EKTTSNGMMS YETRALIDDG GQDFGLLNQN  480
QMSSLMSMTQ NQSNDSQALQ GFGAGNEEQQ QRGIRHNFFD DWPRTSRDRS AAISWTEMER  540
MRSSNSSSAT KLSISIPSEF DSPGSPRCEK LMLSPLKLSM SRDADPLGID PTTQMGLGMG  600
MGMGMGLANQ TSEQCRQKQT NWIPITWESP VGGPLAEVLN STKDCNVKNS ALNLMTDGWD  660
CSPRGGDGSR MASPTGVLQK TFGSLSDSST GSSPRAVNVA KAVHDSAGLC ENLRTVTFVT  720
GASAPISTT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0000730.0KM000073.1 Larix kaempferi growth regulating factor 2 (GRF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7030.0A0A0K0M703_PINTB; GRF2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-49growth-regulating factor 2