PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_84578g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 538aa    MW: 59408.4 Da    PI: 4.9914
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_84578g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.61.2e-21204254155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++ykGVr++k +g+W+AeIrdps+     r +lg+f+taeeAa+a+++a++k++g
  MA_84578g0010 204 CRYKGVRRRK-WGKWAAEIRDPSK---GVRLWLGTFDTAEEAAQAYDEAARKIRG 254
                    78*****998.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-14204254IPR001471AP2/ERF domain
CDDcd000189.04E-34204261No hitNo description
Gene3DG3DSA:3.30.730.101.1E-30205262IPR001471AP2/ERF domain
PROSITE profilePS5103223.775205262IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22205262IPR016177DNA-binding domain
SMARTSM003808.5E-37205268IPR001471AP2/ERF domain
PRINTSPR003673.7E-10206217IPR001471AP2/ERF domain
PRINTSPR003673.7E-10228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MPGPQAVPKS PNKTSLKASR KVKKQKQDDD EPRLSKSLRM RKVKIVFHDP DATDPSSDEE  60
VKLESVPGKR LICEIEIPAD LGLSSVNNSE DENEGGDKRN FEEPVTNSEF ASDVNAHKFK  120
PVISEIVSPV TAHKFKPVIS EIVSPVTAHK SKPKKRGRRL ASKRGAKKNE MDMMEALERV  180
NSGSPFRSSS VLRSLKCRKA GKSCRYKGVR RRKWGKWAAE IRDPSKGVRL WLGTFDTAEE  240
AAQAYDEAAR KIRGPSAPTN FLSKRSEIVD VEHPVSPKMP RKPVKKGIYD SGKEYYLSQT  300
RSKGLDAKVS GKEYISAVLD GPTEAADVLS SSSDFFSCIS EENLDASLVA SPSSVLEVST  360
LVCPEFEEEL EHIFSFSGNL IGLDVSGQLI EPSQQAGFSV QCEGNHLPAS QQANSSEGSC  420
FSSEVSNFPS VNDLLTTNYP DGQNGEQQFN SIRQDNFLTF VIDSLLLSFF ATGEEHCYDD  480
AHLSALEDNY FMEEFGQGFD ISECSNEKDL ASLSNSIDLL DFDLDPEALE WMGLCDCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-19206261359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-182052611471Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206212KGVRRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038820.0BT103882.1 Picea glauca clone GQ02803_J22 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.34e-19ERF family protein