PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_83924g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 311aa    MW: 33663.3 Da    PI: 9.13
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_83924g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08114140127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+lC+++  +  C++Gd+C+FaHg+
  MA_83924g0010 114 FKTRLCNRYGTNEGCQFGDKCHFAHGE 140
                    79*********99************96 PP
2zf-CCCH38.51.9e-12277300226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    kt+lC ++a+ GtC +GdrC+FaHg
  MA_83924g0010 277 KTKLCENYAK-GTCTFGDRCNFAHG 300
                    9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF146083.35969No hitNo description
PROSITE profilePS501036.4565972IPR000571Zinc finger, CCCH-type
SMARTSM003560.019113140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366113141IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5114140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-13114144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8114144IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.61E-14187265IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.1E-14192261IPR004088K Homology domain, type 1
SMARTSM003222.5E-8192262IPR004087K Homology domain
PROSITE profilePS5008413.397193257IPR004088K Homology domain, type 1
PfamPF000131.3E-10195259IPR004088K Homology domain, type 1
CDDcd001051.14E-11195257No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-14274306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9274305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.075275302IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-8275301IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10277300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLRPMEIHGE ISSVEAPVDD DFKFSKNLNL VQRRWCLRQA KGMMLTGSMR GKRGATSGCP  60
FGEGCHYLHY VPGGVNAIPP IPTLGNTFGA ASRKAIGFTP SVPPLDKPDP GLGFKTRLCN  120
RYGTNEGCQF GDKCHFAHGE KELRKGNVLA KDLDRERIAG PYSSMAASGV DSGHSLYRDP  180
PPGTAAAANF GASSTAKISI DASLASCIIG KGGVNTKQIF RITGTKMFIK ENESNPNLKN  240
IELEGSFDQI KQATAMVREL IMHNEIQSAK PYVQNRKTKL CENYAKGTCT FGDRCNFAHG  300
ANELREQSAG S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0848070.0EF084807.1 Picea sitchensis clone WS0282_P16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.12e-88PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-76C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9NU060.0A9NU06_PICSI; Uncharacterized protein
STRINGXP_010265899.16e-88(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-44C3H family protein