PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB

Protein Properties

Length: 250aa MW: 28224.2 Da PI: 9.28

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_8356281g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ll ++++ +G g+W++ ++ g+ R++k+c++rw +yl MA_8356281g0010 14 RGPWTAREDLLLTKYIEAHGEGQWRALPKQAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.4	6.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++l MA_8356281g0010 67 RGNITLDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTHL 112 7899****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.844	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.42E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	5.02E-10	16	61	No hit	No description
PROSITE profile	PS51294	25.743	62	116	IPR017930	Myb domain
SMART	SM00717	1.2E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	4.30E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGRAPCCSKV GLHRGPWTAR EDLLLTKYIE AHGEGQWRAL PKQAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TLDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT HLSKKLMMKG 120 IDPKTHQPAP ERIHKPRRLM KDNEDQETES FEHGMTEKDV ISSSGGKGVQ PIHLPKPNRY 180 IAFPRHLSHE ANVGITNTSV TNSDVQDVLL SPSIDLNSPC KNLQASVDSD HSSSGMLSDI 240 NPIHELGREV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-25	12	116	5	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU131224	0.0	KU131224.1 Picea abies transcription factor MYB35 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007218760.1	4e-85	myb-related protein 308
Refseq	XP_009334363.1	5e-85	PREDICTED: myb-related protein 308-like
Swissprot	Q38850	3e-70	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A167V936	0.0	A0A167V936_PICAB; Transcription factor MYB35
STRING	XP_009334363.1	2e-84	(Pyrus x bretschneideri)
STRING	EMJ19959	2e-84	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-72	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]