PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_834070g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 204aa MW: 23177.9 Da PI: 9.9694

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_834070g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.6e-08	79	104	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k C + +tGtC+y d+C+F Hgp MA_834070g0010 79 KPFVCYQWEATGTCSYRDNCRFPHGP 104 5568******************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	7.977	1	17	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-5	3	22	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-7	74	107	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0085	77	104	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.075	77	105	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-7	79	104	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAGKCHSESC RFAHGREELR QPLRNFQRVG ARDEQEIYRT RNAKRLCRDN SAPRDSEVIS 60 VATTSGSSEG VLQKPIYKKP FVCYQWEATG TCSYRDNCRF PHGPRKLAES LEGLKNGDSA 120 TSDWKQNISN LRSHSVFKQG GIPPKPQTQN VDNVTGKNLF AGSTEKSMEI NANRTQAQQG 180 KKRLATWKWP QKISRIYGDW IDED

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2045	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35430.1	1e-15	C3H family protein