PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_82197g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 37260.4 Da PI: 5.6627 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++I+++ g+ R+ k+c++rw +yl MA_82197g0010 14 KGPWTPEEDIALVSYIQEHGPGNWRLIPARTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ Ed +++++ ++lG++ W++Ia++++ Rt++++k++w+++l MA_82197g0010 67 RGNFTPYEDRIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.09 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.08E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.031 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.98E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRSPCCDKV GVKKGPWTPE EDIALVSYIQ EHGPGNWRLI PARTGLLRCS KSCRLRWTNY 60 LRPGIRRGNF TPYEDRIIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKRLTKLE 120 TMIAGNELNR DSIIRSSFSS DDYRSSKGQW ETKLQTDIHR AKKALFEALN MQGPSSSLQG 180 GGTTSDSMWM ERNPNSSYAV SVENLSKLLE GWKQSSPNER KPASIMINPL EGNQYQSSQY 240 SAEVPISHDS EIEGLHDVDN GSLAWASSFN SSQDYGDDGG SLHDFDLCQM DSYQNTMDNN 300 LPFSVLESWL MEETNQDQFG YNVSELQSV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT100580 | 0.0 | BT100580.1 Picea glauca clone GQ0026_G03 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258354.1 | 1e-107 | PREDICTED: myb-related protein 306 | ||||
Swissprot | P81392 | 2e-96 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A0D6R8Q9 | 1e-134 | A0A0D6R8Q9_ARACU; Uncharacterized protein | ||||
STRING | XP_010258354.1 | 1e-107 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74650.1 | 9e-91 | myb domain protein 31 |
Publications ? help Back to Top | |||
---|---|---|---|
|