PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8183g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 407aa MW: 44715.4 Da PI: 7.9357 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.8e-12 | 259 | 306 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L+ l+P + sk sKa +Le+ ++Y++sLq MA_8183g0010 259 SHSLAERVRRQKISDRMNVLQNLIPGC----SKLTSKALVLEEIINYVQSLQ 306 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.97E-11 | 253 | 310 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-16 | 253 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 255 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.783 | 255 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-9 | 259 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-11 | 261 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MTAFSNYYRI FQESVGITSP ISDSQDTKSQ YNVTNHLADQ QYIKFAPVDG LTSSDSCEAI 60 TTQAIALRPG SSAAEKALLY LYESPTDSLR QQEIINHGMI NDEQVAATAI YGRSVGVDDG 120 DRAVYPTPKS TEREEKKDCD ATNLLFNTPG DGSGMKAPLA KINTACWRMK KRKTDPSVRR 180 SVLEKNVPVL LKKPKRGICK SSPNSSAFSA HGDNSKRKLD VISRDPLELL FNIVKDEQKA 240 ESEKDYIHVR ARRGQATDSH SLAERVRRQK ISDRMNVLQN LIPGCSKLTS KALVLEEIIN 300 YVQSLQSQVE ILSMKLASIT PLCAFDQQNT GHLSRAALPD PMVAYGTSPC CVDRANTVAQ 360 QQTPGTFIEE CSTKLFSTTN GGTVSVRAWS PSLDQTLVGL SQLDASE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111490 | 0.0 | BT111490.1 Picea glauca clone GQ03238_H01 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-39 | bHLH family protein |