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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_80342g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 895aa MW: 97635.5 Da PI: 7.9461 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4.2e-07 | 752 | 801 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ MA_80342g0010 752 RRPFSVAEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 801 6789999*******************9888888**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.04E-8 | 534 | 625 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.569 | 539 | 609 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 16.112 | 747 | 806 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-7 | 751 | 804 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-10 | 752 | 802 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 9.09E-17 | 753 | 803 | No hit | No description |
SuperFamily | SSF46689 | 9.87E-15 | 753 | 833 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008301 | Molecular Function | DNA binding, bending | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence Send to blast |
MCNRVPWATG CARVSDVSVI QRPRSTEKFT QASHRTQEWG TTWGQVLSRG YAKGSKMKPA 60 CPVATGSRLS FPRFKESIXD LADLQAFEIG SVKEINQARE ENGKRMEYGF LGYQAPPLPR 120 AMRSARGRGS GYRKKDGYDN GMVSIELLAT VAGDLLQEQE NQKSAFEQLG VKSFEICHEV 180 AGNGPREEEN CAEEALLELE KSHIYTFEDA VQRQASSSQG TKVEPDDQGS SDENAVVLGA 240 SHRKVTLDAS CIKESPDMII QSASRSVSSI SKSGCPVQSY NHNQKGLDIH VNTQARDEKA 300 MQGISLGESG EKKGCVIEKE VYSTNTCKER FLTEQRLLGS GHNILDSGVG VTKETLGIVE 360 NNEGKGENEI DECNLGRWKR GHHVCENMED DLMLDAHSLP ASSGVSEEAP LDVDMKPPPL 420 VSSASSRKRK RSDIDIIAND DKMLKRETPG YGGSYTRQRT VRCSPSKRRR LAEEICIPTS 480 DGHASTASAG LDSNGEDGEP PASAAKIRRA KSASVSSSPT SATGSSKHSS IKKSSESHVK 540 LTIKSFTVPE LFIDMPESAT VASLKRTVME AAMNLLGDGL RVCVLLQGKK VSDESYTLDQ 600 LGIAHGGKLD SVGFMLEPNP MPTSQACAED PLFMLSRAVT QPSPRYPTGS ASGQTTAAEG 660 NKSAMKSRSN KINGTAGAEV AVTTGGRTQT ETNQWTKSEY EVINDSPHMQ AGSNPGALIV 720 HPIVGAETAQ GLALVPLNHK SRGSEIGKRR IRRPFSVAEV EALVHAVEKL GTGRWRDVKL 780 RAFEQAKHRT YVDLKDKWKT LVHTAKIAPH QRRGEPVPQE LLDRVIHAHN YWTDQQAKQQ 840 AELALAGVPL KEMRATGTTI SLTTHVDAYS TLPIDTNTIY RRWLLQMHGD KKDIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 2e-52 | 736 | 860 | 1 | 119 | Telomere binding protein TBP1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 466 | 470 | KRRRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110902 | 0.0 | BT110902.1 Picea glauca clone GQ03229_J03 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1391 | 12 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 3e-64 | TRF-like 2 |