PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_78829g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 664aa    MW: 74069.9 Da    PI: 4.7154
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_78829g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.12.9e-114154432856
        G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRla 56 
                     P++ilelm+v++Lt+++++SHLQkYR++
  MA_78829g0010 415 LPSRILELMGVNCLTRHNIASHLQKYRSH 443
                    59*************************86 PP
2Response_reg37.61.2e-13201291109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEE.SSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillD.iempg.mdGlellkeireeepklpiivvtahgeeedalealka 92 
                    +l+vd++p+ ++ ++  le  +y +v++++ +e+a+  l  +e+ +++ l+   +  + +dG+++l    e+ +++p i+++ +++ e +l+a+ +
  MA_78829g0010  20 ILVVDKDPATLHDIKAKLEARRY-RVTTFERSEDAVSALtnPESSFQVALIEqADFGErLDGFDILDA--ENRKNIPTIMMSNTDNTEVMLRAFAL 112
                    89*********************.***************666667***99993344446899998875..44478********************* PP

                    TESEEEESS--HHHHHH CS
   Response_reg  93 GakdflsKpfdpeelvk 109
                    Ga ++l Kp + ++l +
  MA_78829g0010 113 GAVEILQKPLSDDKLKN 129
                    ************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.12E-1716138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-1816155No hitNo description
SMARTSM004483.5E-618131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.02819135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-920129IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.35E-1421139No hitNo description
SuperFamilySSF466891.58E-7402446IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-10415443IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.0E-10416446IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MLQVLEDCNL WKKFPKGLHI LVVDKDPATL HDIKAKLEAR RYRVTTFERS EDAVSALTNP  60
ESSFQVALIE QADFGERLDG FDILDAENRK NIPTIMMSNT DNTEVMLRAF ALGAVEILQK  120
PLSDDKLKNV WQHAVRKALA TAIEPTDDSQ NVADEETLWE GEEGGLVIEG NPNLKGDAFV  180
CEKFPAPSTP KQELTDRFYS THENLDESSV SETTHNFKNE IEETRQMEAV EMTPTEDSAS  240
SGLDEVKKEL DISSTESSKP NEKGDACTAS DLNYPCDKME LDSSFDDFCM GMDGDLLSEL  300
DIDSDMFADF SLDDNEGLDI GPYFLDDCEV QEKDLAEEEA LLLAEVSKAE TQTQQLMADL  360
PDTNNSTISS DISVKEELSS EGKKTNGREA SKLTSKTSHG KRKIKVDWTQ DLHRLPSRIL  420
ELMGVNCLTR HNIASHLQKY RSHRKHLLAR EAEAATWNHR RQLYATTGTR ARPWIGQNGN  480
PLIQPRPSIG FPPMAPASHA PFRPLHVWGH PTVDHSSVHM WQKHSMPAPA PWPSPDGYFW  540
QQTTACTNPW DHNAPASGTP LYPQPLMRLP LAPVTGIPHF MPPVYNGEYY KPDNSAIHPV  600
NIDVPAHLKS SSFHPSKEKV DAAINEVLSN PWTPLPLGLK SPSLESVMAE LQRQGIRDVP  660
PASA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0709630.0BT070963.1 Picea sitchensis clone WS02762_D13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PRL20.0C0PRL2_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28401529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-61GBF's pro-rich region-interacting factor 1