PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_78784g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ERF

Protein Properties

Length: 250aa MW: 27856.1 Da PI: 10.2358

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_78784g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.8	1.7e-20	27	77	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp++ ++r++lg+f+taeeAa+a+++a+++l+g+ MA_78784g0010 27 KFRGVRKRP-WGRFAAEIRDPVK---KARVWLGTFDTAEEAARAYDEAARALRGA 77 89*****.******654...5***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.3E-14	27	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-31	27	84	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-22	27	85	IPR016177	DNA-binding domain
SMART	SM00380	5.6E-36	27	90	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.117	27	84	IPR001471	AP2/ERF domain
CDD	cd00018	6.91E-30	27	85	No hit	No description
PRINTS	PR00367	7.0E-11	28	39	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-11	50	66	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MLRQQARNAW QDVENVTKVK SSVKEVKFRG VRKRPWGRFA AEIRDPVKKA RVWLGTFDTA 60 EEAARAYDEA ARALRGAKAK TNFAVPCDDQ STSHSSTVES SSGPRNQNDS KKAFNLNGSG 120 TRLVEISVRS PRNRGAKDAL RSGSDIYKRY RRSRVSEVRD WANSPLQNLG LDAAPCHSDC 180 DSSSSVVVDN DVNSGEDLPC DVKPSQERDV GSPGSVFAWS IRATTWEGGQ LNIMRMDLSK 240 QEKLRYLKHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-20	27	83	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102430	0.0	BT102430.1 Picea glauca clone GQ0192_I10 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S3L6	2e-58	A0A0C9S3L6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_15002_2137 transcribed RNA sequence

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53170.1	1e-18	ethylene response factor 8