PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_76643g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 365aa MW: 40215.8 Da PI: 5.5908

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_76643g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5e-15	15	55	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_76643g0010 15 PEEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 55 7**************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-22	1	60	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.18E-13	1	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.337	5	59	IPR017930	Myb domain
SMART	SM00717	4.5E-14	9	57	IPR001005	SANT/Myb domain
CDD	cd00167	4.56E-12	15	55	No hit	No description
Pfam	PF00249	6.3E-14	15	55	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MNYLRPDVKC GHILPEEEDL ILRLHRLLGN RWALIAGRIP GRTDNEIKNY WNTHLRKKLI 60 SQGIDPRTHK HLSESKDKGS NPGDGETSQK SQRENNTTIP ARNIAESRAD LQAVPSKGEG 120 AITVHCNKDD SKTTTGPANN ANQLPETSPT CNPQPASVAI NCSPQSSGIS STPYSFEEST 180 FSNSNMESRK IPYPPSLPTC FDSLALRGIG RYDLDPYLMK NPVKNSNDMI MSTLRLRSGL 240 QAAPFVGQFD SNQDFISGNA FLNNEKHQMS LQASDVPTSY AVPDEVTGMT YPYHISPSSV 300 AAALGDFNPD IFHALLESVV YEELQLRQPG AHTSVEQNVE RCPLSQPEAS DLTDDLWSML 360 FASSV

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MNYLRPDVKC GHILPEEEDL ILRLHRLLGN RWALIAGRIP GRTDNEIKNY WNTHLRKKLI  60
SQGIDPRTHK HLSESKDKGS NPGDGETSQK SQRENNTTIP ARNIAESRAD LQAVPSKGEG  120
AITVHCNKDD SKTTTGPANN ANQLPETSPT CNPQPASVAI NCSPQSSGIS STPYSFEEST  180
FSNSNMESRK IPYPPSLPTC FDSLALRGIG RYDLDPYLMK NPVKNSNDMI MSTLRLRSGL  240
QAAPFVGQFD SNQDFISGNA FLNNEKHQMS LQASDVPTSY AVPDEVTGMT YPYHISPSSV  300
AAALGDFNPD IFHALLESVV YEELQLRQPG AHTSVEQNVE RCPLSQPEAS DLTDDLWSML  360
FASSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-13	2	59	48	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-13	2	59	48	105	C-Myb DNA-Binding Domain
1msf_C	1e-13	2	59	48	105	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNN4	1e-123	B8LNN4_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-37	myb domain protein 5