PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_7437390g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 22374.6 Da PI: 6.5237 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.2 | 2.5e-07 | 38 | 81 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +E+ RR+r++s +L +llP+ + Kl+ e++++YI++L+ MA_7437390g0010 38 AEQLRRKRMKSLCIQLESLLPTtP-----AKLDRCGLFEETINYIRKLE 81 8*********************55.....9****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.52E-5 | 30 | 85 | No hit | No description |
PROSITE profile | PS50888 | 12.538 | 30 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-10 | 31 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-10 | 32 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-4 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-5 | 38 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
PSEVDLADLQ DYNDLQEKVW QDVDRMLKFS SKESQIFAEQ LRRKRMKSLC IQLESLLPTT 60 PAKLDRCGLF EETINYIRKL EENIHRLKRK RENLLAIQSG KTANENTKIK VAVEFYGREA 120 IISITSQRGP RQMWMILEEL ESHGLDVETS QLFTGEFFVH VFFHVNFRDY ISQDPAQIQT 180 SLECRLKLTY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085956 | 0.0 | EF085956.1 Picea sitchensis clone WS02715_B03 unknown mRNA. | |||
GenBank | EF086728 | 0.0 | EF086728.1 Picea sitchensis clone WS02747_G23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NYK8 | 1e-129 | A9NYK8_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1226 | 15 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-06 | bHLH family protein |