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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_73880g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GeBP | ||||||||
Protein Properties | Length: 358aa MW: 40091.9 Da PI: 4.9617 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 46.3 | 1.1e-14 | 17 | 114 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgk....epsfskehdqkifelskk 94 w +eDe ++qG + + k+g + +++ ++ e++ +s+ +++ksql eK+rr+K +++ ++k+++g+ ++ +++h+++ ++l k+ MA_73880g0010 17 TTHTWMDEDERFIMQGYLVC-VKEGLEFPKNMPQLLEKITDSLVHEANKSQLYEKLRRMKVRYESIKNKMAQGNikedLFAYKSSHEKELYKLWKQ 111 5678**************99.78999999***********************************99999665541111457899************ PP DUF573 95 iWg 97 Wg MA_73880g0010 112 AWG 114 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.9E-15 | 20 | 114 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MATPSAKDSP HKSLKKTTHT WMDEDERFIM QGYLVCVKEG LEFPKNMPQL LEKITDSLVH 60 EANKSQLYEK LRRMKVRYES IKNKMAQGNI KEDLFAYKSS HEKELYKLWK QAWGEQPEGD 120 EVEVEPAGDA MEVDITEAVG DDTRRAGEEQ ITAGDRGEGD AEEEEEAQSD AGTDTVKEPK 180 TPSTEKALVS NHISAKAPVS NHIPAKAPVS SPMPNDKPED RLVYETLVYE TLRKETRGMM 240 AEVTRDVKEM AETSEAELKA YLDSRLSSAN GTRGTGGGSG RRINSAVWSI NRESGLDGIY 300 SLRELPPLDE ARVQMLEGKW REVQILETEA SLKRYAILQE ECSAHLKSLK TSKGNARS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT119101 | 0.0 | BT119101.1 Picea glauca clone GQ04101_H16 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9800 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 8e-10 | DNA-binding storekeeper protein-related transcriptional regulator |