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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_73870g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 592aa MW: 65946.9 Da PI: 5.2156 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 262.4 | 1.6e-80 | 203 | 585 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++lL cA a+++++ ++q+l++ l++las +gd+++Rlaa+ ++A a++++ +lp+se + + + +al f+evsP++++ + + MA_73870g0010 203 EQLLNPCAVAIANNNIVRIQHLIWVLHDLASVSGDANHRLAAHGLRAFTAKIMH----AGGTLPCSEFLSADPKLFHKALLKFHEVSPWYQLLYTI 294 689**************************************************9....778899999998887777788888************** PP GRAS 98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrle 187 aN+ +lea+e + +++H+iD+++s+G+QWp++++aLa Rp+gpp lR+T +++ + +rL+++A++l++++e nv +a+ l+ MA_73870g0010 295 ANRSLLEAFEDQtnKALHVIDIGVSHGIQWPTFIEALARRPAGPPsLLRLTIIADTLGApfsAGPPCNDFPNRLKRYAKSLNLDMEVNV-IAQPLD 389 **********9987999************************8888679*******55448888999**********************9.7***** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +l+ e+L +k++Eala++ +++lh+ll d+++++ +rd+++k++k+l+P v+ ++++++dh+ ++F erf +++++ + ++ds+++ MA_73870g0010 390 SLTREALGIKEDEALAICAQFRLHQLLeegldknegkDNQLTSVPPRDKFIKFIKDLNPLVFFLSDNDIDHSFPDFIERFKNSVDHLWRFLDSTSV 485 ***************************9999888877666666669************************************************98 PP GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 + + eer++vE e + +vn va ga+r+er+e+ +W +r++e GF s+k+ + ak++lrk++s+ +++ e+g++ l+Wk++p++ MA_73870g0010 486 CFKGREcEERRMVEGE-AAMGLVNNVAYDGASRVERNESHLSWGNRVREGGFVCEIPSDKIIDCAKAMLRKHDSN-WEMRLEDGCISLCWKSHPVT 579 8876666*********.88999999************************************************66.899999************** PP GRAS 369 svSaWr 374 ++S W+ MA_73870g0010 580 FCSLWK 585 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.691 | 176 | 566 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.4E-78 | 203 | 585 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MAEGEECNGG YGSLLDWLDI GDESSSMDPF INGDSCPIAD QDHEDFWEAA LPAMDIHPET 60 QFVMEPSFSS NDSVAPTAHR GDAESFWAEP PLNDVEDSSK ITKKRKRTRV SGESTKGKLW 120 NVFENNAASP HTGESVDHGN HCLAPEIKLS SQLGAESDNQ LDLEATRNNS NNNNNSSNSN 180 NKGRSGGRQS SPPNLPKESR WAEQLLNPCA VAIANNNIVR IQHLIWVLHD LASVSGDANH 240 RLAAHGLRAF TAKIMHAGGT LPCSEFLSAD PKLFHKALLK FHEVSPWYQL LYTIANRSLL 300 EAFEDQTNKA LHVIDIGVSH GIQWPTFIEA LARRPAGPPS LLRLTIIADT LGAPFSAGPP 360 CNDFPNRLKR YAKSLNLDME VNVIAQPLDS LTREALGIKE DEALAICAQF RLHQLLEEGL 420 DKNEGKDNQL TSVPPRDKFI KFIKDLNPLV FFLSDNDIDH SFPDFIERFK NSVDHLWRFL 480 DSTSVCFKGR ECEERRMVEG EAAMGLVNNV AYDGASRVER NESHLSWGNR VREGGFVCEI 540 PSDKIIDCAK AMLRKHDSNW EMRLEDGCIS LCWKSHPVTF CSLWKPCLNE PT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 2e-39 | 175 | 586 | 4 | 420 | Protein SHORT-ROOT |
5b3h_E | 2e-39 | 175 | 586 | 4 | 420 | Protein SHORT-ROOT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 107 | KKRKRT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ083536 | 1e-174 | FJ083536.1 Pinus taeda isolate 7966 anonymous locus 0_8801_02 genomic sequence. | |||
GenBank | FJ083544 | 1e-174 | FJ083544.1 Pinus taeda isolate 7963 anonymous locus 0_8801_02 genomic sequence. | |||
GenBank | FJ083545 | 1e-174 | FJ083545.1 Pinus taeda isolate 7964 anonymous locus 0_8801_02 genomic sequence. | |||
GenBank | FJ083548 | 1e-174 | FJ083548.1 Pinus taeda isolate 7965 anonymous locus 0_8801_02 genomic sequence. | |||
GenBank | FJ083549 | 1e-174 | FJ083549.1 Pinus taeda isolate 7961 anonymous locus 0_8801_02 genomic sequence. | |||
GenBank | FJ083550 | 1e-174 | FJ083550.1 Pinus taeda isolate 7960 anonymous locus 0_8801_02 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024183846.1 | 1e-122 | nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2R6W111 | 1e-138 | A0A2R6W111_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4082 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 6e-95 | GRAS family protein |