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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_73369g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 403aa MW: 45841.4 Da PI: 6.7345 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 + pGfrFhPtdeelv +yL++kv++++l++ e ik++diyk++PwdLpk+++ +ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ MA_73369g0010 14 MLPGFRFHPTDEELVGFYLRRKVQQRPLSI-ELIKQLDIYKYDPWDLPKMASIGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIYSSd 108 579***************************.89***************888889****************************************95 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg ktdW+mhe+rl MA_73369g0010 109 GTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 6667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-58 | 13 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.568 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MEQKDDIDQA DEMMLPGFRF HPTDEELVGF YLRRKVQQRP LSIELIKQLD IYKYDPWDLP 60 KMASIGEKEW YFYCPRDRKY RNSARPNRVT SAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPTAADSKSS LDKNLPPNDA WAICRIFKKN TIAHRALSHA 180 WAPPLAERRV ESINSSMNSD MVSGNCMGAV NFIHDPEEQS NETRNQTSTS SNLSNSQSSD 240 HQGYNHDFQP KNAEISMEAS YTTGLDGSDK VESSKSMPSF CGLRPMCLPN LEVPSNYYSH 300 LDPLSLKGTL DLVSCMLQMS PMAEFSVRPS SSDITTVFND PKTNYQNFSF FQPDATTDRH 360 EDIFLKNNIT NDHHISPRSA SSNSTLQFPP QLYDVLKSNV SWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 16 | 175 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 16 | 175 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 16 | 175 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 16 | 175 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 16 | 175 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 16 | 175 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 16 | 175 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083440.1 | 1e-117 | putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A199V147 | 1e-115 | A0A199V147_ANACO; Protein FEZ (Fragment) | ||||
STRING | XP_010258365.1 | 1e-115 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 6e-97 | NAC family protein |