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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_73173g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 60444.2 Da PI: 4.3431 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 228.8 | 2.6e-70 | 165 | 543 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l +lL++cAea+s+g + la+ +L+rl+ l+sp+g++m+R+a y+ +AL ++ ++ + + ++++ ++ l alkl++ + P+++++h+ MA_73173g0010 165 LLHLLTACAEAISEGAQDLAEVILCRLRGLVSPTGSTMERVAYYLFNALVYSINMNSLGHLEPNDKGMSTSSAKEHFLGALKLLHVAYPYIRIGHF 260 579***************************************************9777777777777777777999999***************** PP GRAS 97 taNqaIleavege..erv..HiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnv 180 taNq Ileav+g + v HiiDfdi++G+QWp+L++aL s + +lRiT ++ ++++ +e ++tg+rL+++Ae+lg+pf f+ MA_73173g0010 261 TANQCILEAVAGTgrTNVgiHIIDFDIMEGMQWPPLMEALRSTGdYEIDHLRITSIKWADEDedddgvlYSECCKHTGRRLSEYAETLGIPFLFQE 356 ************95522255********************976658889*******99887788999999999**********************8 PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdslea 273 + l++ + gE ++Vn++ ql ++++ + +++ e+L ++l+P+vv+++ d ++++F e f+ +l+ ++fdslea MA_73173g0010 357 T-----DLKGLKDVISDDGEIVIVNCMWQLPHMVKLRNKMQ--LLEFLVGTRHLNPEVVTLATGPhgNDSaERGDFIESFAGCLKDLCTIFDSLEA 445 3.....444557788999***************95555555..599***************97652133346779********************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg..yrve.eesgslvlgWkdrp 366 +lp++ +r++vEr+++g++ + ++ + ++ ++ + ++G+ + ++s+++++ ak+ l+ +++ g y+ve ++ lvl W + p MA_73173g0010 446 GLPEHGLARAMVERMFFGPAMSRRLMRSPES------GESNVVDIAVKCGYVEGTISNDNVMYAKYTLELCSGAGrcYEVElVGKNRLVLKWASTP 535 ************************9999887......33344688899************************77767999966699********** PP GRAS 367 LvsvSaWr 374 Lv vS W+ MA_73173g0010 536 LVRVSTWK 543 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.102 | 139 | 520 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.1E-68 | 165 | 543 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MQVIGSCMQE AGMGSYNSWF PEQEWDHVFN NPPDGITYDI GEGEQLMNVD LDAAEWSSWD 60 DLIIDVDING CSVDNTNPSL PEKLQAIEEH LMDVELQDGI NNFQEDAISS PRIDEAIVTN 120 SSCKSIETDN SGSSSVDIDH AGSHENRSSK DLNTMSDVEY KGLRLLHLLT ACAEAISEGA 180 QDLAEVILCR LRGLVSPTGS TMERVAYYLF NALVYSINMN SLGHLEPNDK GMSTSSAKEH 240 FLGALKLLHV AYPYIRIGHF TANQCILEAV AGTGRTNVGI HIIDFDIMEG MQWPPLMEAL 300 RSTGDYEIDH LRITSIKWAD EDEDDDGVLY SECCKHTGRR LSEYAETLGI PFLFQETDLK 360 GLKDVISDDG EIVIVNCMWQ LPHMVKLRNK MQLLEFLVGT RHLNPEVVTL ATGPHGNDSA 420 ERGDFIESFA GCLKDLCTIF DSLEAGLPEH GLARAMVERM FFGPAMSRRL MRSPESGESN 480 VVDIAVKCGY VEGTISNDNV MYAKYTLELC SGAGRCYEVE LVGKNRLVLK WASTPLVRVS 540 TWKSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-28 | 165 | 543 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6839 | 13 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-54 | GRAS family protein |