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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_7261g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 344aa MW: 38811.1 Da PI: 6.1609 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.6e-19 | 13 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46 rg W++eEde+l+++v+ +G g +W+ Iar+++ gRt++++k++w++ MA_7261g0010 13 RGLWSPEEDEKLIRYVTTHGHGcwsavpkqaglqRWAQIARHLP-GRTDNEVKNFWNS 69 788*****************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.916 | 8 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.9E-15 | 8 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 11 | 43 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 12 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 13 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.07E-14 | 16 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-11 | 44 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGHRCCNKQK VKRGLWSPEE DEKLIRYVTT HGHGCWSAVP KQAGLQRWAQ IARHLPGRTD 60 NEVKNFWNSC MRKKLIAQGI DPRTHGVISE LEMHEHRTPT CSHEPSSGFQ DGSHRPNSDL 120 ALSGALLSGE ILSKFIDTRD SGLGENVGLP SYGLAPVNAW IDRFLSYEQG QILQEDMDFQ 180 LPFATKDQRD GNMNGKSEMT FHAQENNGNV EFSTFEPYFP FDQTLSAHVE QLDIGSSGHE 240 SHHPLIRPVN EEAAIRFNAD HHLHMNPPSL EANTKPMHVP KVCEIELNEF NSQQLQASNY 300 HQYQNQYLIS YSSSASSAYD EHNLDANLSL DSSIPIGIYF GMIK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116273 | 0.0 | BT116273.1 Picea glauca clone GQ03715_B15 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 5e-43 | myb domain protein 67 |