![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_69872g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 482aa MW: 53823.2 Da PI: 5.4945 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 414.3 | 2.3e-127 | 207 | 418 | 1 | 212 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 ppp aflgpkcalwdc+rpaqgs+w+qdycs fh +alneg+pg+ pvlrp+gidlkdgllfaal ak++gk vgipecegaatakspwna+elf MA_69872g0010 207 PPPEAFLGPKCALWDCPRPAQGSHWCQDYCSDFHGIVALNEGPPGMGPVLRPGGIDLKDGLLFAALGAKTRGKAVGIPECEGAATAKSPWNAPELF 302 89********************************************************************************************** PP VOZ 97 dlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvde 192 dl +l+ge +rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmk++gglkrsyymdpqpss+fewhlyeye+n++da+alyrlelk+vd+ MA_69872g0010 303 DLFVLQGEVVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKDLGGLKRSYYMDPQPSSQFEWHLYEYEMNNCDACALYRLELKQVDS 398 ************************************************************************************************ PP VOZ 193 kksakgkvskdsladlqkkl 212 kk++k+kv+ ds+ dlq+k+ MA_69872g0010 399 KKNTKAKVTGDSVFDLQHKI 418 *****************997 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 482 aa Download sequence Send to blast |
MSKSSAHQLF KTKAKNRVDD LQGMFTDLQQ ARKESRVGDT VVLEEQVHQL LREWKAELHE 60 ASPNTSLLEA SLCSSDLSTD MWRLLQLHEE EDDATSVLAA PYSSKPHLNE NTVEAANPTS 120 FQEVIPTGEM RKDFYANHAS TQVQTIDGTS RSENIHAEPL LQTIDEGLEA AAQMNRDFNH 180 NLCLSFDPEV EEETIPKFQG PCPGISPPPE AFLGPKCALW DCPRPAQGSH WCQDYCSDFH 240 GIVALNEGPP GMGPVLRPGG IDLKDGLLFA ALGAKTRGKA VGIPECEGAA TAKSPWNAPE 300 LFDLFVLQGE VVREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MKDLGGLKRS 360 YYMDPQPSSQ FEWHLYEYEM NNCDACALYR LELKQVDSKK NTKAKVTGDS VFDLQHKIRL 420 SGELSVDTKG NTKGRAKLTQ KNGSKYPYSA ANPVAPVSNN FLYGQAVQYG YYVEETNGYY 480 GT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT115389 | 0.0 | BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011626288.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_011626289.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-170 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | W1Q0P1 | 0.0 | W1Q0P1_AMBTC; Uncharacterized protein | ||||
STRING | ERN14021 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-173 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|