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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_68810g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 483aa MW: 56491 Da PI: 5.8667 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68 | 1.9e-21 | 138 | 217 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Li++r+e+e r+ +g +k lW+e++++++ ++ r ++qC++kwe+l+ yk +++g ++r e p+f++l+ MA_68810g0010 138 WTRSETLKLIRLRTELEPRFAKGGRKSELWDEIAEALQNDQICRDAQQCRDKWEKLAAGYKGVRDGVRDR--E---DNPFFEELH 217 ********************************************************************96..3...458999986 PP | |||||||
2 | trihelix | 66.1 | 7.2e-21 | 388 | 467 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ evl+Li++r em++r+ ++ +++ lW+e +++++++g++r +kqC+ekw++l yk + + +k+ + py+ +l+ MA_68810g0010 388 WKRAEVLQLIKIRAEMDSRFLESTRRGLLWDELAERLMAQGIKRDAKQCREKWDKLMAGYKDVVDDKKEA--NL---SPYYAELT 467 ******************************************************************9984..33...47888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.374 | 130 | 194 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 133 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.002 | 134 | 196 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 5.2E-18 | 136 | 217 | No hit | No description |
CDD | cd12203 | 5.53E-22 | 136 | 201 | No hit | No description |
PROSITE profile | PS50090 | 7.631 | 380 | 444 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.36 | 384 | 446 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-4 | 384 | 444 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.7E-16 | 386 | 468 | No hit | No description |
CDD | cd12203 | 8.01E-23 | 386 | 450 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MTCARWHNTF DLCICCLVST IHSQSVDYST DEEREKREQV LCCRCLFFLL CVLLCWPLCD 60 IPSLCDQVQV QTVQYAISEA VSHPDSTYST QNSSNPDVKG LENDRLGMVE VEEEGDDYKK 120 KEKEKEKEKE HKKRSKNWTR SETLKLIRLR TELEPRFAKG GRKSELWDEI AEALQNDQIC 180 RDAQQCRDKW EKLAAGYKGV RDGVRDREDN PFFEELHILL SGKGSRRERG DKDHHEVQEL 240 ELPKGLLCET GRDSVISETE INTEKRSCDF RDEEEWEVEV MASKGKKRRR PRYVSVSDLS 300 AVKDLIETVI EKQQEFFKDL LETVERKEQM REQARQEKEE KWRAEERAER DMFNNAMMTL 360 TQKLVGASVF QNSSMDGNQA LKKRSRNWKR AEVLQLIKIR AEMDSRFLES TRRGLLWDEL 420 AERLMAQGIK RDAKQCREKW DKLMAGYKDV VDDKKEANLS PYYAELTAML GRQNGQLTIG 480 TIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 133 | KKKEKEKEKEKEHKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395857.1 | 1e-140 | trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A2R6WAH2 | 1e-146 | A0A2R6WAH2_MARPO; Uncharacterized protein | ||||
STRING | PP1S224_109V6.1 | 1e-139 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10636 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 2e-15 | Trihelix family protein |