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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_68801g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 313aa MW: 34303 Da PI: 9.2168 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 36.3 | 1.4e-11 | 30 | 117 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W + v +L+e + ++ +++ g lk ++W+++ + + ++ ++ kqC++k enl++ryk +k+++ +r ss ++++f++l+ MA_68801g0010 30 WHPSTVSKLLESYGDKCATIK-GYLKIKDWDDIVRTVnvhcdASNIAPKTMKQCRDKVENLKRRYKLEKRRATNR-GLSSVHWSFFHKLD 117 99999********99998886.55999**********99998888889*************************98.788889******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.7E-14 | 28 | 119 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGSVSEDEDE YGKGGAVVGG SASSVSRCEW HPSTVSKLLE SYGDKCATIK GYLKIKDWDD 60 IVRTVNVHCD ASNIAPKTMK QCRDKVENLK RRYKLEKRRA TNRGLSSVHW SFFHKLDEIM 120 AMATATATGS DKATSLLEAC QSSFELNQGV DCELPEGFAG ESMPPPPLMS MSMSMSDMVL 180 SVFAGADRGK GLVDNTGGVD CTLDDILNNV CSYSSKNNRR LDFQDSSSPE KQPPPKRKKS 240 SASNSPSVSK KRKGKSTNPI QSLADALVGF SEVYARIEIA KMEMFTKLVL ELAKLRTKRK 300 KRSHSPSIPS DPK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 252 | RKKSSASNSPSVSKKRK |
2 | 299 | 303 | KKRSH |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT100549 | 0.0 | BT100549.1 Picea glauca clone GQ0024_O07 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP11635 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 4e-18 | Trihelix family protein |