PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_65818g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 37320.8 Da PI: 7.9926 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 177 | 223 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++++L MA_65818g0010 177 KSHSEAERRRRERINNHLATLRSLLPNT-----TKTDKASLLAEVIDHVREL 223 79*************************9.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.288 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-15 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-12 | 177 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 178 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-15 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.73E-6 | 187 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MERCFAAGTD ESGVWIAVIP WGREGLNICK RETRKKMQQD EQARSSMNAR RADQDSKMLF 60 PTWPTIAVPS HNVGQGHLEP FQTQVIPGRD QILAAMASEG GSSSSNSFSG FQDLINGGAP 120 LQFSYDYLGG HMLQVPAGLA NYFPTIIVAA TCCRSALEMS KMTAQEIVEA KALAASKSHS 180 EAERRRRERI NNHLATLRSL LPNTTKTDKA SLLAEVIDHV RELKRMVDDI GQASPVPSEA 240 DEITPAPRSQ GGDRNPRQQG EERVSRDQRW LPGSQREIAT LGSRVKNVLV VTSGGSQDPN 300 DVSETPSASS IQEALKAVME RQNSGDLSPA TSSGGNKRQR QVG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 187 | ERRRRE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101202 | 1e-145 | BT101202.1 Picea glauca clone GQ0072_L17 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9S7Y1 | 1e-39 | BH030_ARATH; Transcription factor bHLH30 | ||||
STRING | Aquca_002_01095.1 | 6e-43 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-35 | bHLH family protein |
Publications ? help Back to Top | |||
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