PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_647924g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26198.5 Da PI: 4.9792 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 28 | 78 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y GVr +k +grWv+eIr+p++ + r++lg++ t+e+Aa a++ a+ +l+g+ MA_647924g0010 28 FYIGVRKRK-WGRWVSEIREPRQ---QSRIWLGSYSTPEMAACAHDVAAFALKGH 78 699***999.**********943...4*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-28 | 28 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-20 | 28 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.614 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-28 | 29 | 86 | No hit | No description |
Pfam | PF00847 | 7.6E-11 | 29 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-28 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSQGTDCSGG NMESKTWQKK RSAASHPFYI GVRKRKWGRW VSEIREPRQQ SRIWLGSYST 60 PEMAACAHDV AAFALKGHSA ILNFPDFLQF LPCPPTSSPT DIKAAAAAAA AKINLMLSRS 120 PHPIRNRAEI INVRIDHNAT DEASLVTANI NPIAEWDGGS ISSEELRSKH SVISPVVEMF 180 DQSDALQKCD NEDQLIMDSA NWLMNIEYDL PTARIDEQPV TSEEVEELLL WDFSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-16 | 23 | 85 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 35 | KKRSAASHPFYIGVRKRK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 7e-35 | ERF family protein |