PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_59896g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 317aa MW: 35102.1 Da PI: 5.1997

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_59896g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.2	1e-16	48	108	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +++eq+ +Le+ F++ +p +ee++++ ++l ++ e+ V++WFqNr+ k k+ MA_59896g0010 48 RTRWIPKSEQIGILEAIFNSgMVNPPREEIRRIRAQLekfgEVGEASVYYWFQNRKSKVKR 108 89***************99***********************************997 PP
2	Wus_type_Homeobox	95.4	4.8e-31	47	110	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtRW P++eQi iLe++++sG+++P++eei+ri+a+Le++G+++++ V+yWFQNrk++ +++q MA_59896g0010 47 PRTRWIPKSEQIGILEAIFNSGMVNPPREEIRRIRAQLEKFGEVGEASVYYWFQNRKSKVKRRQ 110 689*********************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.46E-13	43	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.321	44	109	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	45	113	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-8	46	113	IPR001356	Homeobox domain
CDD	cd00086	3.77E-8	47	110	No hit	No description
Pfam	PF00046	1.7E-14	48	108	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MFMKKSSTSP DNPLPEMLNS SAMTLPYSEG ASSHNYVLER ARNPPKPRTR WIPKSEQIGI 60 LEAIFNSGMV NPPREEIRRI RAQLEKFGEV GEASVYYWFQ NRKSKVKRRQ RQLQAVQRSK 120 SNAETGIPSS TSSTASTSTS TSVKSKPMTD LSNSRAANNI QNNIGDQFYS SAELDTSFAG 180 HDYDLQAMYD EMSNYNELSN MQAIGAAHDY DLQAMYDEMA NYNEISNMQA IGTAVAAGGQ 240 GISNEGTGVV QDSVINPNPL ITVFINDNPI QVPMGPINVR AFFGDNVLLF RSSGEFVTVN 300 EWGFTSEGLE HGAKYFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	107	NRKSKVKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	R9R8D1	5e-89	R9R8D1_PICAB; WUSCHEL homeobox protein WOX8B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4697	12	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	1e-31	WUSCHEL related homeobox 8