PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_5838g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 772aa MW: 85323.6 Da PI: 5.5916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.7e-13 | 582 | 628 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI++Lq MA_5838g0020 582 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAVSYINELQ 628 799***********************6.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.1E-53 | 37 | 219 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.301 | 578 | 627 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-19 | 581 | 649 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.38E-15 | 581 | 632 | No hit | No description |
Pfam | PF00010 | 1.2E-10 | 582 | 628 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-19 | 582 | 648 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-17 | 584 | 633 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MVEAFMASSS SSSFLAEYPP WSNAGGDPNG SFNQETLQQR LQLLIDGARE RWTYGIFWQW 60 SYEAGGAVVF FWGDGYFKGA LEDERTNTVA VAKRTTKENA AHQELRKKVL RELHELIDGA 120 SDPADEEVTD VEWFYLVSMT HSFTGVEGVP GHAFMSSAPV WLSGSLKLES FGCQRARQAS 180 QFGIQTMVCI PTPNGVVELG SMDLVCENWG LLQQAKSSFT FSSSFWEDNG NGNINHNNNH 240 NNNYGTNNQS LWNPGSPFLT QESILGDLSF LNNEESQNRN SSAQKSLSIL EENRNPLPPF 300 TVQKQVALEE NRIPPSFPAQ KSAVLDERTS LPLVQKTGIS EGAHNPLPFL SKPPPGGGFD 360 EKSNTLPYSA VQRPAIIDEN CNSLLSQKSS ICSEILNSYP YVTGPKSVDF SETCNSYPVP 420 ALQKTGIENS NQNLLQSAAV LKPNIADQIG NPNSNPNPLL FSVQKTCTID QSKGFIKDLL 480 IEDDKPKPLL DFQRHTLSFA NGYSQNMVEE KMVKPLSIDD EKPKSLPTIS SGAVFGGVRS 540 SIESDHSDVE AASFKEASQA VIEKKPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA 600 LRAVVPNVSK MDKASLLGDA VSYINELQSR VQDIESEKKE LQAQIEATKK ESSSSHSAFS 660 GTNLGFIKDQ SGSSQKPDVK RFGTKECSAL DLEVRILGPD AMIRIQSAKK NHPAARLMTS 720 LQDLELEVHH ASVSTVDELM LQNVIVKLPS SLYTEEQLNA ILLKKLSDPK FK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-49 | 32 | 221 | 4 | 194 | Transcription factor MYC3 |
4rqw_B | 2e-49 | 32 | 221 | 4 | 194 | Transcription factor MYC3 |
4rs9_A | 2e-49 | 32 | 221 | 4 | 194 | Transcription factor MYC3 |
4yz6_A | 2e-49 | 32 | 221 | 4 | 194 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 563 | 571 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator. Common transcription factor of light, abscisic acid (ABA), and jasmonic acid (JA) signaling pathways. With MYC3 and MYC4, controls additively subsets of JA-dependent responses. In cooperation with MYB2 is involved in the regulation of ABA-inducible genes under drought stress conditions. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the MYC recognition site (5'-CACATG-3'), and to the G-box (5'-CACNTG-3') and Z-box (5'-ATACGTGT-3') of promoters. Binds directly to the promoters of the transcription factors PLETHORA1 (PLT1) and PLT2 and represses their expression. Negative regulator of blue light-mediated photomorphogenic growth and blue- and far-red-light regulated gene expression. Activates multiple TIFY/JAZ promoters. Positive regulator of lateral root formation. Regulates sesquiterpene biosynthesis. Subjected to proteasome-dependent proteolysis. The presence of the destruction element (DE) involved in turnover is required for the function to regulate gene transcription. {ECO:0000269|PubMed:12509522, ECO:0000269|PubMed:15208388, ECO:0000269|PubMed:15923349, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:21954460, ECO:0000269|PubMed:22669881, ECO:0000269|PubMed:23142764, ECO:0000269|PubMed:23593022, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9368419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Detected early after abscisic acid (ABA) treatment or after dehydration and high-salt stresses. Induced by UV treatment. Up-regulated by methyl jasmonate and herbivory. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15208388, ECO:0000269|PubMed:23593022, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9368419}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112475 | 0.0 | BT112475.1 Picea glauca clone GQ03315_N01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670616.1 | 6e-78 | PREDICTED: transcription factor MYC4-like | ||||
Swissprot | Q39204 | 3e-75 | MYC2_ARATH; Transcription factor MYC2 | ||||
TrEMBL | A0A0D6QSZ3 | 0.0 | A0A0D6QSZ3_ARACU; Uncharacterized protein | ||||
STRING | Gorai.006G216700.1 | 7e-77 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3733 | 12 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-76 | bHLH family protein |