![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_5748192g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27278.8 Da PI: 9.7489 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78 | 1e-24 | 1 | 90 | 17 | 99 |
E--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 v+pk++ae+h ++ ++++ l +ed ++ + W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++++ +++l+++++r MA_5748192g0010 1 VIPKQYAEKHfpldaasIEDRAKGVLLNFEDiSTEKIWRFRYSYWNSSQSYVLTKGWNRFVKEKRLQAGDIVTFERNS-GSRRLFITFRRP 90 79***********999844557999******6666****************************************654.777788888875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 1.7E-21 | 1 | 89 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-12 | 1 | 91 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.72 | 1 | 91 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.24E-20 | 1 | 89 | No hit | No description |
SuperFamily | SSF101936 | 7.85E-23 | 1 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-28 | 1 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
VIPKQYAEKH FPLDAASIED RAKGVLLNFE DISTEKIWRF RYSYWNSSQS YVLTKGWNRF 60 VKEKRLQAGD IVTFERNSGS RRLFITFRRP SRYLLPHSAP PPPLKRCPLA VNPFTVKGYP 120 HREQFFYTTP PPPEVQNPAA HCSIPWVAGP NSVDFLSTPK SVSDDRKRPS VDFVDQRRSP 180 PSTDGNCDSS SVWLFGVNLQ LSPLNFCSGI TVEEETEHAK RKTTAEAFSG GKRRCDTAVL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-34 | 1 | 100 | 30 | 127 | DNA-binding protein RAV1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019456791.1 | 5e-36 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_019456792.1 | 5e-36 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_019456793.1 | 5e-36 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
TrEMBL | A0A0D6QRH5 | 6e-35 | A0A0D6QRH5_ARACU; Uncharacterized protein | ||||
STRING | Pavir.J38226.1.p | 1e-33 | (Panicum virgatum) | ||||
STRING | Sb06g026370.1 | 2e-33 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14466 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61970.1 | 8e-35 | B3 family protein |