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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_55337g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 471aa MW: 53401.1 Da PI: 9.6337 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 107 | 151 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+ l + + +++G++ Wk+Ia+ ++ g t+k + +w y MA_55337g0010 107 RGSLSEDEQRLVISLQRKYGNK-WKKIASQVP-GTTAKRLGKWWEVY 151 78889*****************.*********.****9998888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 37 | 51 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-7 | 57 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.122 | 58 | 101 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.14E-10 | 87 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.963 | 102 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-6 | 106 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-7 | 107 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-12 | 109 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-4 | 111 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MRSRASRRNH RTSDAPACAS GGVLAQESNT PAIIFFKFLA VRSGGSQSMK ERQQCQSEKD 60 SPLHACVKQN ERPEWNHVSQ RMNRGLDRDP KSSAESWKNY LKPGVKRGSL SEDEQRLVIS 120 LQRKYGNKWK KIASQVPGTT AKRLGKWWEV YGEKQDKIKD TEERSIADSP NYTIEGGKYD 180 DILETFAEKY MQRQKQLATP SSCNLPSIAA MPYVSPAISL GMPTNPTADF IHFAIPSAIT 240 PSLPPWLSNR PNSAHGFGNE TFLNSAPRLS NSSPTSSSSP SVTLSLSPSS SIPVISNTAS 300 ACSSWMKNTT ALNNISGKEN NRGNPQIEMP SIDPGNSGAA DRREIIQEMS MFLQHCRELE 360 EKQQSWLVHK KEACWRLKRL EQQLEAEKAR KRQEKMEEIE FKVRALREEE SLYMNRLETD 420 YKEQLSRIHR DAEMKEGRVV EMWTAKHIQL AKLFEQIVHR HDSHKSSSES H |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075224.1 | 1e-102 | protein rough sheath 2 homolog |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5096 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 3e-79 | MYB family protein |