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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_547683g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TCP | ||||||||
Protein Properties | Length: 334aa MW: 36925.4 Da PI: 7.4236 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.8 | 8.4e-30 | 29 | 108 | 2 | 79 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesss 79 +g+kdrhsk+ T++g+RdRRvRls+++a +++ Lq++LG+ ++sk++eWL+++ak ai+el+ ++s+ as++ + ++ MA_547683g0010 29 TGGKDRHSKVLTSKGLRDRRVRLSVPTALQLYNLQERLGYEQPSKAVEWLIKAAKSAIDELPVLDSEMASASagNVAHLT 108 799*************************************************************7777755533111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-30 | 30 | 140 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.796 | 31 | 89 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MKRKPAAIEI QSGRKVEQEW RIVRVSRPTG GKDRHSKVLT SKGLRDRRVR LSVPTALQLY 60 NLQERLGYEQ PSKAVEWLIK AAKSAIDELP VLDSEMASAS AGNVAHLTSS ISSIVEHCAG 120 SPSVFSLPLE PQSNNDDSPC GIHTHILSGT GNVQKLWDYN NMPSYTDMLS TQDSHPLQNM 180 PSPLTEALQK SFQPVTATLA SSRVFIESPC LQSNEMADSA KQSRDLGVNA EQGRANIPDM 240 IMKSGEQQQQ QQAHMHFMHY ASTFVPLFSN NANCLASSPS SRGTSPSISS SIANIHALSH 300 IYKDSYGEAS ANDFFPFQEY DGREYHELHK QKKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-21 | 36 | 90 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-21 | 36 | 90 | 1 | 55 | Putative transcription factor PCF6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-34 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |