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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_52914g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 1075aa MW: 121952 Da PI: 5.3457 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 270 | 318 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r+rWT eE+e l +a++++G+g+Wk I ++ + k+R+ q+k+++++ MA_52914g0010 270 RKRWTVEEEEALRRAIHRFGPGNWKEIKEHEPlfKNRSTVQIKDKYRQM 318 89********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00085 | 0.00183 | 121 | 159 | No hit | No description |
PROSITE profile | PS51294 | 13.479 | 267 | 323 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-12 | 269 | 321 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-13 | 269 | 318 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-12 | 270 | 318 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.37E-12 | 270 | 320 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.67E-17 | 271 | 319 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1075 aa Download sequence Send to blast |
MFAKQVLTDE ERKVDPELGY PRGYAKLCRN AHIQMRGLIT PYTEGPPQRF IPYTLQPEDM 60 AKMKEFNELF PITESEERDP SSARRYADCL WKQLDHLGNA GFDPAKFRID PYGNVLYINA 120 DPASPLAWEV DHWFPHSRGG KTVPSNLRLV QWQVNQRKQN KLEFLVPWWD LQLGVSVNQF 180 LSIFASKNSD FRQRAYSLFF FAGENEPLNE VLVADCHSWP SSFRERKSQF GLAPAAIVIV 240 QKQADESLKF LSGNRPTNSA WPVPSGTPSR KRWTVEEEEA LRRAIHRFGP GNWKEIKEHE 300 PLFKNRSTVQ IKDKYRQMKG DWELEKENRA DDLSDKELSL SRAVQKENRL KKIREHEIQV 360 KEEEIVHLDK ELKELREQNE AERLALEDLD SILIKHKRRV EKQRRWSETQ SSYRMCLEKM 420 IRDAMHQSIV YKEQGRLNQA ACNALMAKLE TQKATCDASE MELIKKIKQR EDLELLLHPC 480 MEQAKKGLHD DDTSSCSKQI IKIELEEVPT CYPPDIGCAH FANVAAADVK EAPDTVVKHK 540 ETFLPLLESK EEYSTGLRKE LRLFPKEEQA ESKANMCLIA PKEQCRAEME IVQNGPALSV 600 ANLGKKVAVK EKSRLSEAEE SDLDVLIVGY EYEGARARAR EAESVGENVT IATLSDFKQS 660 KFEDWPKEDC ASMVGENNTL SKQSRVAKED RACKPLEDDQ LDKMFGDELA MQGQAEAVIA 720 DTITGEENYD EDDRIEMAGQ SSLDKWLQTS LLNPPQVGED SEPKNNKLTA THDDVTATQV 780 DDSNKLASRS PHLKKTPSFG GSEEKKDATE TTLTMAGVPM LPYSTETAAN TLELVEKFQS 840 LQLACNVEGH EEIQTKADGI PKTMNTDAEL SKKGNEIAIK ENPREEMENE NQAMTTSPAV 900 GNVDEMFEHG VKKILHQQEE ELNNFDQIKV QQTVGRIPMK GDLYYMPELK ESEGSISGDC 960 LQEKERECRL QRSESHRVCS NAYNATASFS GVRRTGGESK GKNVVFGEVV QSGENRELDE 1020 TKRAGDEDGH GHGHQGVMLL KNGLNASIKT CTHVWRKAIK RLEGVAIGTD HNRSV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT106266 | 0.0 | BT106266.1 Picea glauca clone GQ02906_D15 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2877 | 2 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 3e-07 | myb domain protein 3r-4 |