PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_52440g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 595aa    MW: 65728.6 Da    PI: 8.1051
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_52440g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1272e-392233502133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                    +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+elt+++  sa     ++ ++ +a+ ++++++a+++  
  MA_52440g0010 223 TGRKDRHSKVYTAKGPRDRRVRLSALTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELTQLPPLSA--LnIPN-QEPKAEDEGIKEQAEQEI- 314
                    79**************************************************************44444..32111.222222223333333333. PP

            TCP  97 skksqksaasal.nlakesrakarararertrekmrik 133
                        +++aa++  + a +sra ar+rarer +e+ + +
  MA_52440g0010 315 --ALENEAAAKPgARATDSRAIARERARERAKERTQER 350
                    ..222222222203444777777777777777665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-31223350IPR005333Transcription factor, TCP
PROSITE profilePS5136933.467225283IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.447329346IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MQNTSGGAEN RVYVHRYSAL QETLGLEGKG NLYGDRRRGL NLILTFLSVQ GNEILNGVSK  60
EARLAPNLER KLQALDPGRY LNPRKRAVEE ARQILNIDSS SSSSDQNGDE KSLRRSPEEE  120
EEEEKHYGST QDRIHSMSFD DLRSLLVHNT TTTTNPVDSV NITRSRENAS TDVDLARRMC  180
DNKRDSSDQR PPRGRPPGTS IPRQQLPMGE IVEVEGGHIV RSTGRKDRHS KVYTAKGPRD  240
RRVRLSALTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI DELTQLPPLS ALNIPNQEPK  300
AEDEGIKEQA EQEIALENEA AAKPGARATD SRAIARERAR ERAKERTQER SDFDGAAAAA  360
ALYAAAPANS DAAQNSNQQT NQSLFSSSTA SAFQIPSGFS REIVMQEQLH HEFLSSQPQP  420
HRISSAPPVW NCNSIYTDFG NNNTNNIAVS APNMMRGGGG HYNSLTLRGT LQSSSSPVRV  480
RSNPPLLHDN AAAGQCPQTG NGFSGFRIPA RIQGIDENAD VKPSPASSNW ASTRTPMLKN  540
ENAVYDYATA RFVRSSLFRF IQLESADFGT EKGRSRAEKS LFDPVAKTTW GEEAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-19230283154Putative transcription factor PCF6
5zkt_B1e-19230283154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1142770.0BT114277.1 Picea glauca clone GQ03511_M08 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-44TCP family protein