PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_50630g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 461aa MW: 48888.1 Da PI: 7.8248 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 294 | 339 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er+RR+ri +++ L+el+P++ K +Ka +L + +eY+k Lq MA_50630g0010 294 HSIAERQRRERIAERMKALQELVPNC-----SKADKAVMLDEIIEYVKFLQ 339 99***********************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-17 | 287 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-13 | 287 | 343 | No hit | No description |
PROSITE profile | PS50888 | 17.593 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-17 | 291 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 294 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-14 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MVGNEGGPVK GVTACLQKLN SQAENTQPDK TSTNHNQSQP QTEHHQAMDD FLEQILNMPG 60 WPDVGATGKA PWECSSLALD SSQNNQKLFT KSLMGSGQGM MTDFSLEDPL LACRLQQQLP 120 NENLLGPSES TRSMAIQLGT GGGNASPSQL LVGIGSPGLL AVIRSPSSGS AAAAADTITS 180 RSPTQPWRPP YVGLNPVPLS LGQTKVDTAR LLRKRLRDEE AALTRPANTG LFTNFGGGGI 240 AIGSNNEQAG QQSSYELALA QPQAQSSPPP GVVVAPTTAR PRVRARRGQA TDPHSIAERQ 300 RRERIAERMK ALQELVPNCS KADKAVMLDE IIEYVKFLQL QVKVLSMSRL GGAGAVGPLV 360 ADISADVSNN SKMKKGPENR DDEGSSITEG EVAKLMDENM GSAMQYLQSK GLCLMPLSLA 420 TTVSGRSMQP DALVRSPCAS NHVINSPQSS ESKSRSKEGT A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 298 | 303 | RQRRER |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 6e-39 | LJRHL1-like 1 |