PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_4997g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 367aa    MW: 42602.6 Da    PI: 4.4539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_4997g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.24.9e-09134213286
      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   W++  +  L+e   ++  + ++++lk  +W ev+  + ++ ++ ++ +qC+++++ l+k+ykk+++++ +      s+++y++ ++
  MA_4997g0010 134 WSEAATWILLETWGNKYLQAGKKSLKLEQWFEVATTVsAASKILKTDIQCRNRLDTLKKKYKKERQRSPN------SKWVYYQYMD 213
                   999**********************************788899**********************99997......489***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-17131215No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDDTDDDARY PPNAYAAQYY QSHTSNSFHR SKLPLRTAPH EPTAVFEDEE EDEEEEEEKE  60
EEEEGNYGDD EADESENHPE AQESGTRGKN IQKPPDKPAV DRFGVRNPSP TLFPKNNSEY  120
HLGRPEAKGS RDDWSEAATW ILLETWGNKY LQAGKKSLKL EQWFEVATTV SAASKILKTD  180
IQCRNRLDTL KKKYKKERQR SPNSKWVYYQ YMDALLNSSP WQAGLPYGMD AGKFVSQVPL  240
RPKICSNHAR FKEVWDGPGD SPSEEEEEEE EEEEDEEADE GRGLKRRKDD EDSFRILADS  300
IHRFGEIYER IENSKKQQML DLEKMRMEFD RDLEMQKRRI LEQTQIELAK IRQGSDDIDA  360
SVTNMSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286RGLKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1105100.0BT110510.1 Picea glauca clone GQ03222_M16 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-46Trihelix family protein