PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_49770g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 301aa    MW: 32184.4 Da    PI: 4.5892
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_49770g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.4e-11557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT eE+  l  +v ++G+g W+tI +          R+  ++k++w++++
    MA_49770g0010  5 KLKWTSEEECALRAGVVKYGTGKWRTILKDPEfaaclVARSNVDLKDKWRNLM 57
                     689**********************************9*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.37161IPR017930Myb domain
SuperFamilySSF466891.25E-14258IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
PfamPF002491.0E-6556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-13557IPR009057Homeodomain-like
CDDcd116601.61E-20757No hitNo description
Gene3DG3DSA:1.10.10.104.8E-11117186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF466891.25E-14118154IPR009057Homeodomain-like
SMARTSM005262.2E-9118183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.631120188IPR005818Linker histone H1/H5, domain H15
PfamPF005381.9E-8124183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKLKWTS EEECALRAGV VKYGTGKWRT ILKDPEFAAC LVARSNVDLK DKWRNLMSSV  60
SPGGQGSKTP RPKLLAPVPL SSAAPLSTAT TSSAAAAISD HVISSPKSIS TSTTARNPSP  120
RCDYDDMILE ALTALGDPNG TEVATIASFM EERHQLPPSF RRALSSKLKR LVLQEKISRV  180
RNGYKLRDLA EVNPAVPGPL LPIDGSMQLC SNGTDASSVN MINEASVDMI NEASMAAAMK  240
IAEADAMSAL AEEAAREAEI DLRLVAEADA FLEAASSIFG EVESSLFDEF SLDEVEGFDY  300
N
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127790.0BT112779.1 Picea glauca clone GQ03320_N21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AA991e-103D5AA99_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-48MYB_related family protein