PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_49315g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 455aa    MW: 51094.5 Da    PI: 7.4611
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_49315g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.23.7e-17155243186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+++ v +L++a+++++   +r+klk+++We+v+k++    +  + ++++ qCk+k+e+++kry+ ++++  +  s++ s++p+f +++
  MA_49315g0010 155 EWSEEAVCTLLDAYESKWLLRNRAKLKGNDWEDVAKQVstrsSGIKSHKTQSQCKNKIESMKKRYRSEAASICNPGSGT-SSWPFFARMD 243
                    5*************************************99555555699*********************999875555.59******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819951.15E-694138No hitNo description
PfamPF138374.3E-21153244No hitNo description
CDDcd001670.00117155216No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MCSTPKPPPY PTPLQLCHNQ RAIETETDFF LGLGVLELDQ SVETVIFGDR TLIDPSLFIF  60
CCQIFSMFSG VNNLDSRENV GKYISWLLLS MVGNQQQQQH QQQQQQQQHH QQQQAPLLRV  120
QVPQQQAQHQ QLQQSYMKTG ENGLSKTPDR TKRDEWSEEA VCTLLDAYES KWLLRNRAKL  180
KGNDWEDVAK QVSTRSSGIK SHKTQSQCKN KIESMKKRYR SEAASICNPG SGTSSWPFFA  240
RMDGLLRCST IPQARPGGVC VDTGGQPALT DLGMQALPKV EIGDSEMVYK RVQEIQPNPG  300
EFIEGNLNHL AVVEAEGHMQ DSNQEDGSNT LPNRKESAAL DSDTSTPRSK VANVGEGSGK  360
GHSSKRRKNS SSEVAESIRS FADSILKLEQ AKMEMYKDSE RLRAETEQLH QMVLLQACRS  420
EKHKVEGCRY SLSLNGRRAD LSLQDLSFCA IVQKF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1129840.0BT112984.1 Picea glauca clone GQ03323_M04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845516.26e-97trihelix transcription factor ASIL2
TrEMBLA0A0D6QSB61e-161A0A0D6QSB6_ARACU; Uncharacterized protein
STRINGERN071914e-97(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-51sequence-specific DNA binding transcription factors