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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_4774g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TCP | ||||||||
Protein Properties | Length: 557aa MW: 60521.1 Da PI: 8.46 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.4 | 6.4e-31 | 80 | 211 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaksk 98 +g+kdrhsk+ T++g+RdRRvRls+++a++++dLq++LG+d++sk++ WL+++a+ ai+el+ ++ + s++ ++ + ++sn s+++++ ++ ++ MA_4774g0010 80 TGGKDRHSKVITAKGLRDRRVRLSVPTAIQLYDLQERLGYDQPSKAVGWLIKAAESAIDELPVLNPEMDSASADNVAQLNSSNCSNADHCVGSPRES 176 689*************************************************************333333333333333333333334444443222 PP TCP 99 ksqksaasalnlak.esrakarar..arertrekm 130 + +++ ++ +aka+ r + +re m MA_4774g0010 177 ATAVTGSAFTAFRVgLGSAKAQGRnsHKAINREPM 211 22222222222222222233333311222344444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-28 | 81 | 204 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.446 | 82 | 140 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MVSNSSQDLE AWFIKVNNRE PEMEIQNKDL AAFSESMNKG RLQEDSDKTQ GNGKGSKRKA 60 WKMEGKVEQE WKIVSVSRLT GGKDRHSKVI TAKGLRDRRV RLSVPTAIQL YDLQERLGYD 120 QPSKAVGWLI KAAESAIDEL PVLNPEMDSA SADNVAQLNS SNCSNADHCV GSPRESATAV 180 TGSAFTAFRV GLGSAKAQGR NSHKAINREP MSIATLRGSD LGRSSSSISD GSIKGSAEHT 240 SNCSVSEPLR GSDLGRSSSS ISDGSIKGSA EHTSNCSVSE PTSRIEARLK ASELATKKSV 300 SAKNSGGGSP PAIDQLNSMQ PFLTSYMLKS IFPDTPLLFE SKFSKDNNPC GIHTQILSGT 360 DNVQQLWDYN SRPSYTDMLC TRDSHQLQDL ASSSTAPLQK SFPRVPSTPG SHIGNSCLQS 420 YEMADSAISF FDPKQSRPFG GNAEQGQANL SYSNFPNMIT KRVEQQRQQQ AQMHIKHYAS 480 TIVPTFSNDI NFLTSSLSSR EPHQSISSSI TNMPSLSHTH KNAYGEASAN AAHDFVPSQD 540 YEARVFPGFQ YAGQRKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-21 | 87 | 141 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-21 | 87 | 141 | 1 | 55 | Putative transcription factor PCF6 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118606 | 0.0 | BT118606.1 Picea glauca clone GQ04008_C12 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-32 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |