PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_448849g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 554aa MW: 59612.7 Da PI: 6.9897 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.4e-11 | 410 | 452 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L MA_448849g0010 410 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 452 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.58 | 403 | 452 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-16 | 406 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-9 | 409 | 452 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-14 | 409 | 458 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-16 | 410 | 466 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.42E-13 | 410 | 456 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MNLNGGVWGL EDATDLHCNN DENLNLPTFK AMLDAEEWFT SHSNTSNNDI TTASINNANS 60 HPDGPCFNID MKDFGCYSSL VNPNPEPPNM LLQHAMNSCS SSPASIFSLD PSQVQSFLAG 120 GSNHHHHHHV SPFPDVAGSS PFQELACEGL VSSNNASSNS SSNSYLYGGL PGGIFRQLSP 180 SFAGSSPRTN TVTPTPNLSS PHSQMGGSST PNLSPRMMPT SNLNLSDTGL FASSNHTTTT 240 TNNNNLSNLL GLSSLMSPRI PAPLNFSSPK MLRPLEICAP VGAQPTLFQK RAALRHTALS 300 RCTTTPCIEV LDEESPNGNS NSNVKGKSKL MLVGADNKEE EDVDESNDGS GVHYDSDDVG 360 ANNNSYKVDQ IGEDGLASAG GTGNADAVNN NINGGGDKGK KKGLPAKNLM AERRRRKKLN 420 DRLYMLRSVV PKISKMDRAS ILGDAIEYLK ELLQKINDLH NELESTSQGP VLPGTSNFHP 480 LTPTTPSLPC RVKEECPTSL PSPNAQPARM YFGQSKPKKE KLHLKRLKLC CYTLQAVILQ 540 YSLKSVHGCR ICIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 405 | 462 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 399 | 417 | KKKGLPAKNLMAERRRRKK |
2 | 411 | 418 | ERRRRKKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116341 | 0.0 | BT116341.1 Picea glauca clone GQ03716_N08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B2KZF3 | 1e-167 | B2KZF3_PICAB; Inducer of CBF expression 1 (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 8e-55 | bHLH family protein |