PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_4395g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23759.1 Da PI: 8.4544 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.9 | 3.2e-07 | 66 | 113 | 7 | 35 |
HHHHHHHHHHHHHHHHHHCTSCC.C.....................TT CS HLH 7 erErrRRdriNsafeeLrellPk.as..................kaps 35 Er+RR+++N+ + +Lr+++Pk + ++++ MA_4395g0010 66 HTERKRRKKLNDTLYTLRSVVPKiSKtmnpltnancalgkrsieSGDK 113 57*********************5547777777777666666664444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-6 | 63 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-5 | 66 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-6 | 67 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDTRLQYAGE IFKSDYYEDQ NNKLWLDNMD EIAGQLDWDD SDPEIIGGSK PATKTNYLQA 60 ASKNLHTERK RRKKLNDTLY TLRSVVPKIS KTMNPLTNAN CALGKRSIES GDKKKSVDKL 120 KHGKVLQVEI CNAGEGGIYH VRIEGKKETG GLVKLTRALE SLPLQIMNSN ICCFDEAIHY 180 SLTVNVKSLG NVGTDKLEDM IRKTTTRDCF E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 74 | ERKRRKKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF678571 | 0.0 | EF678571.1 Picea sitchensis clone WS02928_G24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LRN6 | 1e-146 | B8LRN6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 9e-12 | bHLH family protein |