PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_436312g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 294aa    MW: 32651 Da    PI: 5.6345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_436312g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-09235281246
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                      + W+  Ed  l++a k ++++   +W+++a+ ++ g++  qc  r+  
   MA_436312g0010 235 LGWSSAEDIALLNALKTFPKDtnmRWEKVAAAVP-GKSKTQCMKRFSE 281
                      67********************************.*********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071769151193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-7231282IPR009057Homeodomain-like
PROSITE profilePS512939.486232287IPR017884SANT domain
SMARTSM007173.1E-8233285IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-11233283IPR009057Homeodomain-like
PfamPF002497.8E-8237281IPR001005SANT/Myb domain
CDDcd001671.71E-7237283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDYYDEDPRP RFQFQASSIP IPQQSASIDR KHAAFCIGIG TLIFSYGCLL PGIWQILLAW  60
IGLSLAIGPL APISLTGGDI RVGCGEILEE PQIETPKLEP ERKNYRGKAK RSENSNPEIP  120
ISNIPRSDEI PEENKNGEAD ARVSVVSRVS DDEEWTAEDV ELLKKQLSKN PPAFRGARSV  180
DSIVKKAKSL GERKPGDDDS YAKFLAKRKI SDKIEMNLAE GADLADEEED RGKKLGWSSA  240
EDIALLNALK TFPKDTNMRW EKVAAAVPGK SKTQCMKRFS ELKLNFRNSK ASDT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1061500.0BT106150.1 Picea glauca clone GQ02903_P22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R8P11e-123A0A0D6R8P1_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-48MYB_related family protein