PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_42080g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 645aa MW: 71483.8 Da PI: 6.4223 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.2e-07 | 453 | 500 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k a +L + ++Y++sLq MA_42080g0010 453 SHSLAERVRREKISARMKYLQDLVPGC----NKVTGRAVMLDEIINYVQSLQ 500 8*************************9....66799***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.60E-8 | 447 | 504 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-15 | 447 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 449 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.672 | 449 | 499 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-4 | 453 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-8 | 455 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MEWGRLAHPH LPAPIAITIR MRADWAVSQT EHRQAKALQL VFGVRRCCCS DLLGYYVPES 60 LTETQFGYLI QRGFTDGSHS TQHLLYSLQQ PQEQQSEVTL LPDNPNNMNA MDMCMLDRQR 120 KGPNAQQQLN WPQQQQFLRT NYNSEQMHGP FTSLLTSSEM FSDGIITSEW QQLAEQNGHL 180 VTANPEYTMN IGRPMSSQGS ALRQTLSRSM SSPNGPLNLH TDWSNLSNNT ESMCTVESEA 240 NGRSAIKAPA CLGPFPSDPA FAQRAAKFSS LNGKSWNGRL STSQRASDGE AETGSLEFLS 300 DVARNEPQVA CSDDSESKKA FCRTTSCPPT VEHAAAETEK SSVVVEESAV SEKSSARDAK 360 TSNNNAVKKR KSGRTSAQNH RAADSEESKE KRSKTVHPDT EEKELVMAKT EQSNSDNSVD 420 SSPKPARANP KPLENQKQDY IHVRARRGQA TDSHSLAERV RREKISARMK YLQDLVPGCN 480 KVTGRAVMLD EIINYVQSLQ RQVEFLSMKL AAVNPSLEFN IDNFFAREMM MPVPPPGNFS 540 SLEGMSPNLA PYIHFQQMLQ QQASLQAGAC SGLDVPTLDT TPSLHRPGSA EMFGDAANFQ 600 GHAPSTWDSE LQNVFSMGLV QDRQPPFSSE GLPGHLEPNH MKMEM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104728 | 0.0 | BT104728.1 Picea glauca clone GQ02814_B12 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26260.2 | 8e-52 | cryptochrome-interacting basic-helix-loop-helix 5 |