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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_40826g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 165aa MW: 19207.8 Da PI: 6.2762 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.6e-11 | 44 | 82 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 T+eEdel+++ k+ G++ W++Ia +++ gR ++++ +w MA_40826g0010 44 TEEEDELIIRMYKLVGNR-WSLIAGRLP-GRKAEEIERYWK 82 9*****************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.2E-6 | 39 | 87 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-8 | 43 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-14 | 44 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-9 | 44 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-9 | 44 | 83 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 44 | 82 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MVAATVLRRN MDDVFAQRCS RHFTARDQLI SKESRNLGWV CDITEEEDEL IIRMYKLVGN 60 RWSLIAGRLP GRKAEEIERY WKMRSINTAP LKPIPSRITI NPWLQTHMAP EETACSYNTV 120 YTQNLHSEEE EEEGEESRVE DTRKSTDYML VRPVSPVLKA SCRCS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT124137 | 0.0 | BT124137.1 Picea sitchensis clone WS0471_O23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ACZ1 | 1e-118 | D5ACZ1_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3921 | 8 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 7e-19 | MYB_related family protein |