PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_40826g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 165aa MW: 19207.8 Da PI: 6.2762

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_40826g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	6.6e-11	44	82	5	45
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 T+eEdel+++ k+ G++ W++Ia +++ gR ++++ +w MA_40826g0010 44 TEEEDELIIRMYKLVGNR-WSLIAGRLP-GRKAEEIERYWK 82 9***************.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.2E-6	39	87	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.87E-8	43	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-14	44	82	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-9	44	83	IPR001005	SANT/Myb domain
CDD	cd00167	1.99E-9	44	83	No hit	No description
PROSITE profile	PS50090	7.317	44	82	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MVAATVLRRN MDDVFAQRCS RHFTARDQLI SKESRNLGWV CDITEEEDEL IIRMYKLVGN 60 RWSLIAGRLP GRKAEEIERY WKMRSINTAP LKPIPSRITI NPWLQTHMAP EETACSYNTV 120 YTQNLHSEEE EEEGEESRVE DTRKSTDYML VRPVSPVLKA SCRCS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT124137	0.0	BT124137.1 Picea sitchensis clone WS0471_O23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5ACZ1	1e-118	D5ACZ1_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3921	8	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53200.1	7e-19	MYB_related family protein