PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_3942g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bZIP

Protein Properties

Length: 200aa MW: 22839.4 Da PI: 6.2799

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_3942g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.8	1.3e-09	84	135	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +l + ++ NReA r++R++Kka ++ Lee+v++L + N++L +l+++va MA_3942g0010 84 SLAKKKKPFGNREAVRKYREKKKAHTAYLEEEVQKLRSLNQQLL---RRLQDQVA 135 6778889999*******************************999...55555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-9	82	149	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.2E-13	82	149	No hit	No description
PROSITE profile	PS50217	8.783	84	150	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.8E-13	86	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.04E-7	87	133	No hit	No description
CDD	cd14686	1.86E-11	94	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDNGELEFSD EVFPNSDHAT SFPMITSLDT ILDEVLKKNT HSCTHTHTCN PPGRDNTHTH 60 TCYHTHTQFL STEEEDQLGG TSESLAKKKK PFGNREAVRK YREKKKAHTA YLEEEVQKLR 120 SLNQQLLRRL QDQVALEAEV ERLRTVLFEF RGKIDSELGS FPYQKPCSGN VKEGDCSVQP 180 HNGDLNLRCE TDVPCLHPPF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ016114	1e-140	JQ016114.1 Pinus taeda isolate 648 hypothetical protein (0_12104_01) gene, partial cds.
GenBank	JQ016124	1e-140	JQ016124.1 Pinus taeda isolate 644 hypothetical protein (0_12104_01) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615170.1	1e-75	PREDICTED: basic leucine zipper 24-like isoform X2
Refseq	XP_017615171.1	1e-75	PREDICTED: basic leucine zipper 24-like isoform X2
Swissprot	Q8VY76	3e-63	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A2P5RAH7	4e-74	A0A2P5RAH7_GOSBA; Uncharacterized protein
STRING	Gorai.012G081200.1	5e-74	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1970	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	6e-35	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]