PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3891g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 545aa    MW: 59939.9 Da    PI: 8.9535
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3891g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1142.1e-351012793133
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceae 76 
                   g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+LG+d++s +++WL+++ak ai+elt +                       +          
  MA_3891g0010 101 GGKDRHSKVLTAKGLRDRRVRLSVPTAIQLYDLQDRLGLDQPSMAVDWLIKAAKSAIDELTVLdtemasasvgntvqltssdcstvE---------- 187
                   68*************************************************************444444444444333333222220.......... PP

           TCP  77 sssssasnsssg..............................................kaaksaakskksqksaasalnlak.esrakarararert 126
                              +                                              ++++s+  s k +++++s+ +++k  sr++ar +arer 
  MA_3891g0010 188 -----------HcvgspretaasalssftvgqgttshkstngriisittlkesdlgrsSSSTSD-GSIKGSAEHTSNCSMSKpVSRKEARLKARERA 272
                   ...........13333444444555555566666666677788999999999999974333333.44455555555577777799999999999999 PP

           TCP 127 rekmrik 133
                   r+k +  
  MA_3891g0010 273 RKKSSSA 279
                   9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.337102160IPR017887Transcription factor TCP subgroup
PfamPF036344.8E-34102278IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MLRNSFKDLE IGLLRVKNRE TEAEVHSKDL AAFSESINKS PLQEDSADGR SKHDTYKRQD  60
NGKGSKRKVG EMERKAASVE AQSGKKIEQD WRIVRVSQLI GGKDRHSKVL TAKGLRDRRV  120
RLSVPTAIQL YDLQDRLGLD QPSMAVDWLI KAAKSAIDEL TVLDTEMASA SVGNTVQLTS  180
SDCSTVEHCV GSPRETAASA LSSFTVGQGT TSHKSTNGRI ISITTLKESD LGRSSSSTSD  240
GSIKGSAEHT SNCSMSKPVS RKEARLKARE RARKKSSSAK NSGGSPPAIH ELKSMQPSLT  300
SLFKNVSPYT TLPLEPQCRK DDNPCGIHAQ VLSETGCAQQ MLDYNNTPSY TDMLCTQDSH  360
PLQNMASSWT AALQKSFQPV PSTLASMQAV IGSSLPQSYE MVDSAFPLFH PKQSRHLESN  420
TAEGQGNHFF PNMTMKSVEQ EQQASQINIK HFASTIVPTF SNYINFSTSS LSSKEHLQAN  480
SSSATNMPSF SHTPKNAYGE ASAKAAHDFV HLQDYDARIF QESHTLQHNV NHEHNHLWAK  540
QKQYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-19107160154Putative transcription factor PCF6
5zkt_B2e-19107160154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.19e-33plastid transcription factor 1