PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_357440g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 509aa MW: 56495.1 Da PI: 5.7901 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38 | 3.8e-12 | 28 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed +l +++ + G +W+ +a+ g+ R++k+c++rw +yl MA_357440g0010 28 KGLWSPDEDNKLTNYIIRNGLMgCWNYVAKQAGLQRCGKSCRLRWINYL 76 678*****************667************************97 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 6.1e-13 | 82 | 125 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ + +E+ l++++ lG+ +W+ Ia++++ gRt++++k++w+ MA_357440g0010 82 RGPISRQEERLIIHLQSSLGNSRWSQIAAHLP-GRTDNEIKNYWN 125 788999**************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.82 | 23 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.07E-23 | 25 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-7 | 27 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-10 | 28 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 29 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.16E-7 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 22.7 | 77 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-13 | 81 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-11 | 82 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 84 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.63E-11 | 84 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MGWTLGQRQE ATEGESVPSN PSRRRLRKGL WSPDEDNKLT NYIIRNGLMG CWNYVAKQAG 60 LQRCGKSCRL RWINYLRPGL KRGPISRQEE RLIIHLQSSL GNSRWSQIAA HLPGRTDNEI 120 KNYWNSSIKK KIMLKHDRPS AAAANGDXXX NRKSNFPFQS KRICNADSVP AHVQEVATSS 180 HSSQPYLQVM PVEGYQPHNS AFNILLATGE NQLCVPGLLE FKQEARDQND EFLIDRDLIN 240 PDFISPSLQT QGLYNYKAAR SSTCDELIAE SCRTTVAPHE VPGSANNYFL GSAGISIPAL 300 VERQTSKEKI ENEMLIDYSS FAASSGISAG SAGHSYSNIA ADFTDVYSGV SYTNELLGVR 360 ILEDLVSVHH EKTAHQSWPP LNFVAQVSAP SIRGANNLDA EDDWKDRPNL RYDVNLGVPT 420 YIDINSSLQT TYQIEGGGGF GDQLDFSRIL NEKENTNPIP AIFGGGNGAL EIHEYYEGEA 480 EQVTVWAQDN MCNINTAAAS SDPYQVYLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 26 | 132 | 5 | 108 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 27 | RRRLRK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-49 | myb domain protein 86 |