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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_34924g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 401aa MW: 45495.4 Da PI: 8.4532 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.5 | 4e-09 | 37 | 114 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ + +L+ +++ +++rg+l k++W ++++++ + + s +qCk kw+ l+k y k k + + s+++y+++ MA_34924g0010 37 WPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLHGET------SRFVYYKR 114 99999999999999***********************88776377******************9876554......24556655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-9 | 39 | 117 | No hit | No description |
PRINTS | PR01911 | 5.9E-16 | 266 | 283 | IPR020428 | Protein-tyrosine phosphatase SIW14-like, eukaryotic |
Gene3D | G3DSA:3.90.190.10 | 1.4E-8 | 266 | 331 | IPR029021 | Protein-tyrosine phosphatase-like |
SuperFamily | SSF52799 | 4.32E-12 | 266 | 336 | IPR029021 | Protein-tyrosine phosphatase-like |
Pfam | PF03162 | 1.8E-20 | 267 | 334 | IPR004861 | Protein-tyrosine phosphatase, SIW14-like |
PRINTS | PR01911 | 5.9E-16 | 303 | 316 | IPR020428 | Protein-tyrosine phosphatase SIW14-like, eukaryotic |
PRINTS | PR01911 | 5.9E-16 | 322 | 336 | IPR020428 | Protein-tyrosine phosphatase SIW14-like, eukaryotic |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MASPSIQFQN PNENRPALAL KRIETTKSSR AQKEALWPNT SIDVLLLKFE DTCFSVSRGR 60 LGKTHWGRIA DAVNAVCSAN YSGVQCKYKW NRLKKSYNKA KLHGETSRFV YYKRVERIVQ 120 KASGEKLHED EEEEEEEEEE EMASEDDGVD SICEAASIES KPSSASMSAT EDDDVHRRPQ 180 KRGVTLKSFG DKMEQSMNNL AQSMKNIEKT RTDKMMKLLD AQLEITSMLV QNNKRLKPSD 240 GVAAGRAWAM NEAGLMCQQQ GRVSSFVPPL NFAMVDKGVY RSGFPNHANF PFLKTLKLRS 300 IIYLCPEPYS EVNMKFLRAE EIQIFQFGII GYKGWEESAT AVVEIVEGPR RRQPSDRKDA 360 WRADRDSANS TFDILQASCV REERNAEARS PKHLGRFRPG S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1xri_A | 6e-26 | 267 | 333 | 3 | 69 | At1g05000 |
1xri_B | 6e-26 | 267 | 333 | 3 | 69 | At1g05000 |
2q47_A | 6e-26 | 267 | 333 | 3 | 69 | Probable tyrosine-protein phosphatase At1g05000 |
2q47_B | 6e-26 | 267 | 333 | 3 | 69 | Probable tyrosine-protein phosphatase At1g05000 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677546 | 0.0 | EF677546.1 Picea sitchensis clone WS02770_G18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LNY6 | 0.0 | B8LNY6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-07 | Trihelix family protein |