PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_33964g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 40257.1 Da PI: 4.7636 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + G +W+++++ g+ R++k+c++rw +yl MA_33964g0010 14 KGPWTAEEDQKLISFILHNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.6e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++l++d++ qlG++ W++Ia +++ gRt++++k++w+++ MA_33964g0010 70 LSESEEQLIIDLHSQLGNR-WSKIAGHLP-GRTDNEIKNYWNTH 111 5899***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-21 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.905 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.26E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.567 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.71E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLISFIL HNGHCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SESEEQLIID LHSQLGNRWS KIAGHLPGRT DNEIKNYWNT HIKKKLKRMG 120 IDPVTHRPIT DQTESKPSKP AFDEATEESD SNPTKKEILQ AVTEVSCRSN DSEITEEAEK 180 SIDSVKAVKL EAAQLATGYG FDPMLFDERS STVYLCDLPV TENQNMENSS LDFVGNALFR 240 SASDDQSLLE FAEVPPPGII SGPLKSQEGL NDELALINPC SSFNVPLETS TSNSADQELQ 300 WTNEVSNAAT ANYDILLGGA ESIPETDMQL WHIEHLQSAF DAGWDIHHGV NNTIFSNPLF 360 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00513 | DAP | Transfer from AT5G16600 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT106711 | 0.0 | BT106711.1 Picea glauca clone GQ03008_L22 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1NYY3 | 3e-85 | W1NYY3_AMBTC; Uncharacterized protein | ||||
STRING | ERN00579 | 5e-86 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 1e-86 | myb domain protein 43 |