PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_336002g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 107aa MW: 11955.6 Da PI: 6.0806

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_336002g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.7	4.8e-07	57	94	5	44
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++E++l+ +++++lG + W++Ia +++ R +++ ++ MA_336002g0010 57 SADEEDLINRLHNLLGDR-WALIAGRLP-WRRVEEIENYC 94 789***********99.*****.***999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.2E-4	52	100	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.65E-5	56	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-8	57	93	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-6	57	95	IPR001005	SANT/Myb domain
CDD	cd00167	6.83E-5	57	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MIILIHIYLS MEDSKQHFSP PKAEGDCNVT PGGGLISLCG SSVEYCQKSA CAAHDISADE 60 EDLINRLHNL LGDRWALIAG RLPWRRVEEI ENYCKMRYTP STSSSRS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT109362	1e-172	BT109362.1 Picea glauca clone GQ03207_J20 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NQX0	1e-18	A9NQX0_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3921	8	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	9e-14	MYB family protein