PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_3352g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 274aa MW: 30034.1 Da PI: 6.2392

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_3352g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.8e-31	99	152	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl MA_3352g0010 99 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 152 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.06E-20	96	156	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.485	96	155	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-31	98	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	100	152	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	102	151	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MKEEDWLGKW EDELPSPEEL MPLTQNLITP DLAAAFKIHP SSASASAPTE SGSVFPGSGQ 60 QQQRPGVEPP KRIELEEEES SVGGVTENVG EEPARTLKRP RLVWTPQLHK RFVDAVAHLG 120 IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL SSEGPSSCDQ LFASTPVPPS 180 HFLHRDDMVV PLVPMGMGVP GLGHGHMVPG PPHYGGFDPR YLTTLSRQQQ QPPPPQRLAP 240 SAATPRGEYV VVEDLSSTVT PPRQVLTLFP TGDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	5e-34	99	155	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085076	0.0	EF085076.1 Picea sitchensis clone WS02722_K04 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055817.1	1e-74	transcription factor MYBC1-like
Swissprot	Q9SNB4	4e-58	PCL1_ARATH; Transcription factor LUX
TrEMBL	A9NUS3	0.0	A9NUS3_PICSI; Uncharacterized protein
STRING	Solyc10g080960.1.1	1e-73	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1157	17	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	3e-56	G2-like family protein

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]