PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_324587g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 470aa    MW: 51392.6 Da    PI: 6.8855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_324587g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.7e-07249273226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt+ C+ f+    C+yGdrC+F H+
  MA_324587g0010 249 KTRHCKKFYTDEGCPYGDRCNFVHD 273
                     8999********************7 PP
2zf-CCCH42.98.3e-14315340126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++Gd+C+FaHg
  MA_324587g0010 315 WKTRICNKWETTGHCPFGDKCHFAHG 340
                     8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-9246274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272247275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7247274IPR000571Zinc finger, CCCH-type
SMARTSM003561.1249274IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4249273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17310345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10311345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145314342IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-9314341IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-11315340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MRVLNKLKEE IFFSYTLAGF PWVTRQHNCL EKESSIFLVH AFFKVLVCIP GVLKQRETME  60
YEVDTSGAAE LGMGMGGGAV EGDMYWVAGG NEQEMWATEE DYDQASSQGY RQSDGGWSGG  120
DYRAGGLEGR QSRSGSEPPH KKSKNGHGDL QGNGSRGRSG YQGELVQGTS SGTPPPSNGT  180
VNEVTSSGGG KSKGTGRIFF KTKLCCKFRA EIVAAQEEDR AQRAERRGEN QIPCVSSSGA  240
GNDSQRFHKT RHCKKFYTDE GCPYGDRCNF VHDDQSRSRE YVAISLAPTP SPVSGNGAGN  300
GNNGGNGSFQ RPSNWKTRIC NKWETTGHCP FGDKCHFAHG LAELQKYGGG LLDGENGEMS  360
VGLRNDLKQS GTLPKAHVDA GAGPSSSVYN TDNYVIGPSN QRSMGNFISQ RQGQRILPKW  420
KGPDKISRIY GDWIEDNEWE FTSRSTASQI EKVSQAEEEI LNEVEIKEGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1143910.0BT114391.1 Picea glauca clone GQ03513_L14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519258.11e-96zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ35e-72C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0D6R3G61e-109A0A0D6R3G6_ARACU; Uncharacterized protein
STRINGERN002604e-96(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-53C3H family protein