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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_320104g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 121aa MW: 14183.8 Da PI: 8.8166 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.4e-11 | 52 | 93 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE e++ a k++G++ +++Ia+ +g +R q++ + qky MA_320104g0010 52 WTKEEREKFHVALKMFGTD-FEAIAEFVG-TRNSTQVRTHAQKY 93 *******************.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.383 | 47 | 98 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-6 | 47 | 96 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-12 | 48 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-9 | 48 | 96 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-7 | 50 | 96 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.97E-8 | 52 | 93 | No hit | No description |
Pfam | PF00249 | 7.5E-10 | 52 | 93 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MQADFSGFED FKYFQNEIFH PTEQIEIMKA QDEQGEVPLP VETKKVSENR YWTKEEREKF 60 HVALKMFGTD FEAIAEFVGT RNSTQVRTHA QKYYAKMVRD YKKNGKASQT QNKGQKSSSN 120 N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380186.1 | 6e-36 | myb-like protein I | ||||
TrEMBL | A0A2K1KBB1 | 1e-34 | A0A2K1KBB1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S80_153V6.1 | 1e-35 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP11644 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 2e-12 | MYB_related family protein |