PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

MA_318922g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 388aa MW: 42976.4 Da PI: 4.6269

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_318922g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.7e-07	28	68	1	39
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkq 39 +g W++eEde+l+ ++ + +W+++a+ g+ R++k+ MA_318922g0010 28 KGLWSPEEDEKLIAYIMNNRMLdcSWASVAKQAGLQRCGKS 68 678*************99999********999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-9	21	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.02E-5	22	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.228	23	81	IPR017930	Myb domain
Pfam	PF00249	8.1E-6	28	68	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MRCRQGEGEG EELREGLTQP FSKPKLRKGL WSPEEDEKLI AYIMNNRMLD CSWASVAKQA 60 GLQRCGKSSF PHAYDAPASL SSAQPYSNAM PEGYQTPKNT FNVLTNGENQ LCVPGVLELK 120 QEQVQDQNDE IKQLISYFEI LNDTATHTND SVSSHADFIS PSQQAKVLTE SCKTTIPPLE 180 GPDSANYSLG STGITIPAVT ERDCLKKQYE NDRWRTSHCC SNANDGFHVA DPEAYTVHKA 240 EEYKSLYEKT THQASPPLSF CSQFAGPAIK WPPGQSNEFQ SENDSRDDLN LRNDVNLGIP 300 KYVDIYCRKN NYQLPHIDGG VGNQWNFSTI PHEETDANPI PTILAGGGSG LFQIECEAGA 360 GQVTGWAHDG IYNLNTSAIS DFDQIYFS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MRCRQGEGEG EELREGLTQP FSKPKLRKGL WSPEEDEKLI AYIMNNRMLD CSWASVAKQA  60
GLQRCGKSSF PHAYDAPASL SSAQPYSNAM PEGYQTPKNT FNVLTNGENQ LCVPGVLELK  120
QEQVQDQNDE IKQLISYFEI LNDTATHTND SVSSHADFIS PSQQAKVLTE SCKTTIPPLE  180
GPDSANYSLG STGITIPAVT ERDCLKKQYE NDRWRTSHCC SNANDGFHVA DPEAYTVHKA  240
EEYKSLYEKT THQASPPLSF CSQFAGPAIK WPPGQSNEFQ SENDSRDDLN LRNDVNLGIP  300
KYVDIYCRKN NYQLPHIDGG VGNQWNFSTI PHEETDANPI PTILAGGGSG LFQIECEAGA  360
GQVTGWAHDG IYNLNTSAIS DFDQIYFS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110517	0.0	BT110517.1 Picea glauca clone GQ03222_O19 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	1e-12	myb domain protein 55